TABLE 2.
Secreted or released proteins affected by eep deletion in USA300
| Gene ID | Gene name | Spectral count |
Fold change (eep/WT) | P value | Protein function | |
|---|---|---|---|---|---|---|
| WT | eep | |||||
| Upregulated | ||||||
| SAUSA300_0079 | 1.4 | 12.5 | 9.10 | 0.0015 | Putative lipoprotein | |
| SAUSA300_0220 | pflB | 1.0 | 2.3 | 2.41 | 0.0381 | Formate acetyltransferase |
| SAUSA300_0278 | esxA | 11.8 | 29.1 | 2.46 | 0.0045 | ESAT-6-like protein |
| SAUSA300_0372 | 130.7 | 285.6 | 2.19 | 0.0076 | Putative lipoprotein | |
| SAUSA300_0693 | saeP | 155.3 | 343.5 | 2.21 | 0.0004 | Putative lipoprotein |
| SAUSA300_0759 | gpmI | 1.3 | 4.3 | 3.39 | 0.0471 | 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase |
| SAUSA300_0769 | 28.7 | 87.3 | 3.04 | 0.0015 | Putative lipoprotein | |
| SAUSA300_0793 | 0.1 | 2.8 | 27.55 | 0.0007 | Uncharacterized protein | |
| SAUSA300_0897 | trpS | 0.7 | 2.4 | 3.59 | 0.0242 | Tryptophan-tRNA ligase |
| SAUSA300_0950 | sspB | 315.6 | 612.2 | 1.94 | 0.0118 | Cysteine protease |
| SAUSA300_0951 | sspA | 182.8 | 334.3 | 1.83 | 0.0113 | V8 protease |
| SAUSA300_0992 | 20.7 | 80.4 | 3.89 | 0.0016 | Putative lipoprotein | |
| SAUSA300_1044 | trxA | 2.8 | 7.4 | 2.64 | 0.0019 | Thioredoxin |
| SAUSA300_1058 | hla | 444.3 | 707.6 | 1.59 | 0.0147 | Alpha-hemolysin |
| SAUSA300_1068 | 3.0 | 7.6 | 2.51 | 0.0253 | Antibacterial protein | |
| SAUSA300_1247 | 0.6 | 1.7 | 2.60 | 0.0464 | Uncharacterized protein | |
| SAUSA300_1295 | cspA | 4.9 | 7.7 | 1.57 | 0.0486 | Cold shock protein CspA |
| SAUSA300_1327 | ebh | 2.5 | 4.1 | 1.64 | 0.0501 | Extracellular matrix-binding protein |
| SAUSA300_1382 | lukS-PV | 218.3 | 439.8 | 2.01 | 0.0116 | Panton-Valentine leukocidin |
| SAUSA300_1440 | 0.4 | 12.8 | 35.04 | 0.0011 | Uncharacterized protein | |
| SAUSA300_1492 | 6.4 | 17.9 | 2.78 | 0.0021 | Putative lipoprotein | |
| SAUSA300_1704 | leuS | 1.2 | 2.9 | 2.46 | 0.0499 | Leucine-tRNA ligase |
| SAUSA300_1757 | splB | 120.9 | 187.3 | 1.55 | 0.0148 | Serine protease |
| SAUSA300_1759 | 2.4 | 9.4 | 3.95 | 0.0103 | Uncharacterized protein | |
| SAUSA300_1790 | prsA | 62.8 | 170.5 | 2.71 | 0.0002 | Foldase protein |
| SAUSA300_2161 | hysA | 39.6 | 79.2 | 2.00 | 0.0131 | Hyaluronate lyase |
| SAUSA300_2253 | ssaA | 136.0 | 167.0 | 1.23 | 0.0197 | Secretory antigen |
| SAUSA300_2299 | 3.4 | 5.4 | 1.58 | 0.0242 | Multidrug resistance protein A, drug resistance transporter | |
| SAUSA300_2546 | betB | 0.1 | 3.3 | 32.64 | 0.0005 | Glycine betaine aldehyde dehydrogenase |
| SAUSA300_2572 | aur | 30.0 | 69.3 | 2.31 | 0.0043 | Zinc metalloproteinase aureolysin |
| Downregulated | ||||||
| SAUSA300_0113 | spa | 293.7 | 137.6 | 0.47 | 0.0198 | Immunoglobulin G binding protein A |
| SAUSA300_0203 | 1.6 | 0.1 | 0.06 | 0.0009 | Putative lipoprotein | |
| SAUSA300_0224 | coa | 6.0 | 3.3 | 0.55 | 0.0232 | Staphylocoagulase |
| SAUSA300_0235 | ldh1 | 15.0 | 3.6 | 0.24 | 0.0079 | l-Lactate dehydrogenase 1 |
| SAUSA300_0437 | 4.2 | 1.7 | 0.42 | 0.0214 | Lipoprotein | |
| SAUSA300_0504 | pdxS | 11.2 | 2.0 | 0.18 | 0.0025 | Pyridoxal 5-phosphate synthase subunit |
| SAUSA300_0536 | hchA | 31.2 | 18.5 | 0.59 | 0.0285 | Molecular chaperone Hsp31 and glyoxalase 3 |
| SAUSA300_0547 | sdrD | 16.1 | 3.2 | 0.20 | 0.0135 | Serine-aspartate repeat-containing protein D |
| SAUSA300_0569 | 2.4 | 0.4 | 0.16 | 0.0034 | Putative heme-dependent peroxidase | |
| SAUSA300_0594 | adh | 5.0 | 0.1 | 0.02 | 0.0008 | Alcohol dehydrogenase |
| SAUSA300_0681 | 3.2 | 0.4 | 0.13 | 0.0036 | Uncharacterized protein | |
| SAUSA300_0717 | 4.8 | 1.7 | 0.34 | 0.0079 | Ribonucleoside-diphosphate reductase, beta subunit | |
| SAUSA300_0753 | 4.6 | 2.0 | 0.43 | 0.0218 | Epimerase family protein | |
| SAUSA300_0812 | 14.9 | 8.4 | 0.56 | 0.0074 | Uncharacterized protein | |
| SAUSA300_0871 | 6.7 | 2.4 | 0.35 | 0.0166 | Uncharacterized protein | |
| SAUSA300_0955 | atl | 1895.2 | 1489.6 | 0.79 | 0.0326 | Autolysin |
| SAUSA300_0973 | purM | 2.1 | 0.1 | 0.05 | 0.0004 | Phosphoribosylformylglycinamidine cycloligase |
| SAUSA300_1236 | 21.3 | 2.4 | 0.11 | 0.0029 | Uncharacterized protein | |
| SAUSA300_1491 | 1.8 | 0.4 | 0.22 | 0.0146 | Proline dipeptidase | |
| SAUSA300_1512 | pbp3 | 3.1 | 0.1 | 0.03 | 0.0002 | Penicillin-binding protein 3 |
| SAUSA300_1525 | glyQS | 2.2 | 0.7 | 0.34 | 0.0381 | Glycine-tRNA ligase |
| SAUSA300_1972 | int | 2.1 | 0.4 | 0.19 | 0.0141 | Integrase |
| SAUSA300_1974 | lukG | 463.6 | 334.2 | 0.72 | 0.0328 | Uncharacterized leukocidin-like protein |
| SAUSA300_2249 | ssaA | 230.0 | 139.0 | 0.60 | 0.0010 | Secretory antigen SsaA |
| SAUSA300_2364 | sbi | 222.2 | 129.5 | 0.58 | 0.0034 | Immunoglobulin-binding protein |
| SAUSA300_2436 | sasG | 312.8 | 139.0 | 0.44 | 0.0017 | Putative cell wall surface anchor family protein |
| SAUSA300_2441 | fnbA | 5.5 | 2.0 | 0.37 | 0.0026 | Fibronectin-binding protein A |