TABLE 3.

Signal peptide-containing proteins affected by eep deletion in USA300

Gene ID	Gene name	Fold change (eep/WT)	P value	Signal peptidea
Lipoproteins
SAUSA300_0079		9.10	0.0015	MIKKLFFMILGSLLILSAC
SAUSA300_0203		0.06	0.0009	MKKIISIAIIVLALVLSGC
SAUSA300_0372		2.19	0.0076	MKLKSLAVLSMSAVVLTAC
SAUSA300_0437		0.42	0.0214	MKRLIGLVIVALVLLAAC
SAUSA300_0693	saeP	2.21	0.0004	MNTKYFLAAGAVITTLALGAC
SAUSA300_0769		3.04	0.0015	MKKVMGILLASTLILGAC
SAUSA300_0992		3.89	0.0016	MKFGKTIAVVLASSVLLAGC
SAUSA300_1492		2.78	0.0021	MKKLVSIVGATLLLAGC
Nonlipoproteins
SAUSA300_0113	spa	0.47	0.0198	MKKKNIYSIRKLGVGIASVTLGTLLISGGVTPAANA
SAUSA300_0224	coa	0.55	0.0232	MKKQIISLGALAVASSLFTWDNKADA
SAUSA300_0547	sdrD	0.20	0.0135	MLNRENKTAITRKGMVSNRLNKFSIRKYTVGTASI
SAUSA300_0950	sspB	1.94	0.0118	MNSSCKSRVFNIISIIMVSMLILSLGAFANNNKAKADSHSKQLEIN
SAUSA300_0951	sspA	1.83	0.0113	MKGKFLKVSSLFVATLTTATLVSSPAANA
SAUSA300_0955	atl	0.79	0.0326	MAKKFNYKLPSMVALTLVGSAVTAHQVQA
SAUSA300_1058	hla	1.59	0.0147	MKTRIVSSVTTTLLLGSILMNPVANA
SAUSA300_1327	ebh	1.64	0.0501	MNYRDKIQKFSIRKYTVGTFSTVIATLVFLGFNTSQAHA
SAUSA300_1382	lukS-PV	2.01	0.0116	MVKKRLLAATLSLGIITPIATSFHESKA
SAUSA300_1757	splB	1.55	0.0148	MNKNVVIKSLAALTILTSVTGIGTTLVEEVQQTAKA
SAUSA300_1790	prsA	2.71	0.0002	MKMINKLIVPVTASALLLGA
SAUSA300_1974	lukG	0.72	0.0328	MIKQLCKNITICTLALSTTFTVLPATSFA
SAUSA300_2249	ssaA	0.60	0.0010	MKKIATATIATAGFATIAIASGNQAHA
SAUSA300_2253	ssaA1	1.23	0.0197	MKKLVTATTLTAGIGTALVGQAHHADA
SAUSA300_2364	sbi	0.58	0.0034	MKNKYISKLLVGAATITLATMISNGEAKA
SAUSA300_2436	sasG	0.44	0.0017	MRDKKGPVNKRVDFLSNKLNKYSIRKFTVGTASILIGSLMYLGTQQEAEA
SAUSA300_2441	fnbA	0.37	0.0026	MKNNLRYGIRKHKLGAASVFLGTMIVVGMGQDKEAA
SAUSA300_2572	aur	2.31	0.0043	MRKFSRYAFTSMAALTLLSTLSPAAL

^aThe lipobox is in boldface type.