TABLE 3.

List of polymorphic markers used for linkage map construction and QTL analysis.

Marker	Chrom	Flanked/associated CR gene	Forward	Reverse	References
GC2360	A03	CRa	CAGCACCAGCATAACCAGCTACAGTC	AGAACTTTGCAAGTGGCTCAGATAAT	Matsumoto et al., 2012
GC2920	A03	CRa	CAAAGAACTGCCTGTTGTAAGTAAA	TGTTCAACAAGTTCCCATCTCCAT	Matsumoto et al., 2012
JY14	A03	CRa	GCGTGTTTGATGACTTTCCCT	GGTGGTGGAAACCCTAGGAA	This study
JY44	A03	CRa	AGACTTTGCAAGACCTCAACA	CTGAAGAGGAACAGGGTCAT	This study
CRaJY	A03	CRa	GTTGGAGACGGAGGTGAAGA	GCATCCCGTGAGATTCAGTT	This study
TCR05	A03	CRb	AGAATCATGACCGGGGAAAT	GCAGCTAAGTCATCGACCAA	Piao et al., 2004
TCR09	A03	CRb	GCAGCAACCGATAATATAAGGA	AACCAGAAGAAGAAAAACAAAAA	Piao et al., 2004
TCR17	A03	CRb	GCACATCACTTTGAGGACGA	TTTCCGTTGTCCTTTGTGAA	Piao et al., 2004
TCR30	A03	CRb	CGTGGATCTCGTCTTCAGGT	GGAACAGTATACTTCCCGGTGT	Zhang et al., 2014
TCR74	A03	CRb	ATGGATGATGGATGGATAGAGTG	TTGAACCATAGGAGGGATAGTTG	Zhang et al., 2014
TCR79	A03	CRb	TGACGTTCAATCAAAGCCTGA	TTTAGCAATCAAATGCAAATTCAA	Zhang et al., 2014
KBrH129J08Rc	A03	CRbKato	ATGAGATTGAAGAGGGAAACACAA	GTTTCCAATGGTGAAACCAATCCTA	Kato et al., 2012
KBrH129J18R	A03	CRbKato	AGAGCAGAGTGAAACCAGAACT	GTTTCAGTTCAGTCAGGTTTTTGCAG	Kato et al., 2012
KBrB091M11R	A03	CRbKato	ACTTAAAGCACGAGAATGCAAA	GTTTGGTGTCGAAGCTATGTGTG	Kato et al., 2012
KB69N05	A03	CRbKato	ATCACAACCAAAATGGAATGAC	GTTTCTCAAGCACCGAGACTCATAA	Kato et al., 2013
KB59N06	A03	CRbKato	ATGAAATTGCAACTCTCAAAATG	GTTTAGGCTTTCTCCATCAACCACTA	Kato et al., 2013
KB59N03	A03	CRbKato	AGGTAAATCCTCAAAAAGCCAT	GTTTGGCGAAATTCAGTTGACA	Kato et al., 2013
B4732	A03	CRbKato	ATCTGATGTACCTTTGTGCTGG	GTTTGTCAATCATTCAAGCTAAGTGG	Kato et al., 2013
B0903	A03	CRbKato	ACTTCCTCTGCTTTTCTCAGGT	GTTTGAAACTCTTCTCCCCCTTC	Kato et al., 2013
BGA06	A03	CRbKato	AGAAATAGCAAAGCTCAAACGG	GTTTCCAGAAAAGAGATGCAGACAA	Kato et al., 2013
BGB41	A03	CRbKato	ATCGCATAAACTAATAAAAATCAAAA	GTTTGACCCACATGATTAACAA	Kato et al., 2013
KB29N19	A03	CRbKato	ATGAGATCGTCAGCCATTTCTC	GTTTCCAGTCCGGTTTTTATTACCTT	Kato et al., 2013
KB29N16	A03	CRbKato	AGACTCGACAAGGTATCGATCT	GTTTGACGCCATTATGACACAACT	Kato et al., 2013
KB29N11	A03	CRbKato	ACTCTCCACCAACACTTCCTAA	GTTTGAAGCTATCTTAGACCACC	Kato et al., 2013
KB91N13	A03	CRbKato	AGACGGAGACTTTGAGATCTGG	GTTTCGAGTACTTCCAGAAACACG	Kato et al., 2013
Ol11-G11	A03	Crr3	GTTGCGGCGAAACAGAGAAG	GAGTAGGCGATCAAACCGAG	Fredua-Agyeman and Rahman, 2016
BrSTS-020	A03	Crr3	CTTCAGAACATCAGAAAGGGTCTT	TTGTTAATCTTGGTTGGGATGTTA	Fredua-Agyeman and Rahman, 2016
BRMS-050	A03	CRb	AACTTTGCTTCCACTGATTTTT	TTGCTTAACGCTAAATCCATAT	Fredua-Agyeman and Rahman, 2016
BnGMS344	A03	CRb	TGGGAAGAATCTCGTTAGAA	TCTCCTCTTCGGTTACGATA	Fredua-Agyeman and Rahman, 2016
Na10-B01	A03	CRk	CAAGTGTCTGCTAGGTGGGG	TCGATCGAAGAAACCAGACC	Fredua-Agyeman and Rahman, 2016
Ol11-B05	A03	CRk	TCGCGACGTTGTTTTGTTC	ACCATCTTCCTCGACCCTG	Fredua-Agyeman and Rahman, 2016
Na14-E02	A03	CRk	ACTGGCTACATGAGTTTCAGTG	GAGGGAAGACAACTGGTCTCA	Fredua-Agyeman and Rahman, 2016
BRMS-088	A08	Crr1	TATCGGTACTGATTCGCTCTTCAAC	ATCGGTTGTTATTTGAGAGCAGATT	Suwabe et al., 2003
A08-5021	A08	Crr1	CAGATGAGACAACACAGGAAACA	ACTCAATACGTTTTTCGCGG	Hasan and Rahman, 2016