Table 2.
RNA editing sites in soybean chloroplast transcripts.
| Gene | Position a | Codon Site b | Conversion |
|---|---|---|---|
| accD | 617 | 2 | S(uCg)→L(uUg) |
| atpF | 92 | 2 | P(cCa)→L(cUa) |
| clpP | 559 | 1 | H(Cau)→Y(Uau) |
| ndhA | 341 | 2 | S(uCa)→L(uUa) |
| 1073 | 2 | S(uCu)→F(uUu) | |
| ndhB | 9 | 3 | W(ugG)→stop codon (ugA) |
| 149 | 2 | S(uCa)→L(uUa) | |
| 542 | 2 | T(aCg)→M(aUg) | |
| 586 | 1 | H(Cau)→Y(Uau) | |
| 737 | 2 | P(cCa)→L(cUa) | |
| 746 | 2 | S(uCu)→F(uUu) | |
| 830 | 2 | S(uCa)→L(uUa) | |
| 836 | 2 | S(uCa)→L(uUa) | |
| 1112 | 2 | S(uCa)→L(uUa) | |
| 1255 | 1 | H(Cau)→Y(Uau) | |
| 1481 | 2 | P(cCa)→L(cUa) | |
| ndhC | 323 | 2 | S(uCa)→L(uUa) |
| ndhD | 2 | 2 | T(aCg)→M(aUg) |
| 383 | 2 | T(aCa)→I(aUa) | |
| 674 | 2 | S(uCa)→L(uUa) | |
| 878 | 2 | S(uCa)→L(uUa) | |
| 1298 | 2 | S(uCa)→L(uUa) | |
| ndhE | 233 | 2 | P(cCg)→L(cUg) |
| ndhF | 290 | 2 | S(uCa)→L(uUa) |
| petB | 611 | 2 | S(uCa)→L(uUa) |
| psaI | 79 | 1 | H(Cau)→Y(Uau) |
| psbE | 214 | 2 | S(uCc)→F(uUc) |
| psbF | 6 | 3 | T(acC)→T(acU) |
| 77 | 2 | S(uCu)→F(uUu) | |
| psbL | 2 | 2 | T(aCg)→M(aUg) |
| rpl23 | 89 | 2 | S(uCa)→L(uUa) |
| rpoA | 200 | 2 | S(uCa)→L(uUa) |
| rpoB | 338 | 2 | S(uCu)→F(uUu) |
| 551 | 2 | S(uCa)→L(uUa) | |
| 566 | 2 | S(uCg)→L(uUg) | |
| 2000 | 2 | S(uCu)→F(uUu) | |
| rpoC1 | 41 | 2 | S(uCa)→L(uUa) |
| 488 | 2 | S(uCa)→L(uUa) | |
| rps2 | 134 | 2 | T(aCa)→I(aUa) |
| 248 | 2 | S(uCa)→L(uUa) | |
| rps12 | 554 c | ||
| rps14 | 80 | 2 | S(uCa)→L(uUa) |
| rps16 | 499 c | ||
| 212 | 2 | S(uCa)→L(uUa) | |
| rps18 | 221 | 2 | S(uCg)→L(uUg) |
a Position is given with respect to the initiation codon of each chloroplast transcript. b Codon site is the order in the amino acid codon. c RNA editing sites are in introns of the chloroplast gene. The position here is given with respect to the initiation codon of each gene.