| SNP | Single Nucleotide Polymorphism |
| rSNP | Regulatory Single Nucleotide Polymorphism |
| CNN | Convolutional Neural Network |
| TF | Transcription Factor |
| TFBS | Transcription Factor Binding Site |
| V+C | Vicin and Convicine |
| FDR | False Discovery Rate |
| HMI | Horizontal Mutual Information |
| GTE | Generalized Topological Entropy |
| CPE | Core Promoter Element |
| PWM | Position Weight Matrix |
| MSS | Matrix Similarity Score |