. Author manuscript; available in PMC: 2020 Jul 10.

Published in final edited form as: Environ Sci Technol. 2017 Jul 25;51(16):9146–9154. doi: 10.1021/acs.est.7b02703

Table 1.

CrAssphage qPCR Assay Oligonucleotides and Targeted Genomic Regions

qPCR assay	primer or probe	sequence 5′ → 3′	genomic region
CPQ_056	056F1	CAGAAGTACAAACTCCTAAAAAACGTAGAG	14731–14856
	056R1	GATGACCAATAAACAAGCCATTAGC
	056P1	[FAM] AATAACGATTTACGTGATGTAAC [MGB]
CPQ_064	064F1	TGTATAGATGCTGCTGCAACTGTACTC	16030–16177
	064R1	CGTTGTTTTCATCTTTATCTTGTCCAT
	064P1	[FAM] CTGAAATTGTTCATAAGCAA [MGB]