Table 4.
Rapid Annotations using Subsystems Technology (RAST) predicted proteins potentially associated with plant growth promotion traits within the genome of Microbacterium metallidurans TL13.
| Protein name | Start | Stop | Length (pb) | Feature ID |
|---|---|---|---|---|
| Ammonia assimilation | ||||
| Ammonium transporter | 28,180 | 26,909 | 1,272 | fig|69370.7.peg.113 |
| Glutamine synthetase type I (EC 6.3.1.2) | 68,639 | 70,063 | 1,425 | fig|69370.7.peg.148 |
| Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) | 78,333 | 75,340 | 2,994 | fig|69370.7.peg.153 |
| Glutamine synthetase type I (EC 6.3.1.2) | 79,681 | 78,341 | 1,341 | fig|69370.7.peg.154 |
| Glutamate synthase [NADPH] small chain (EC 1.4.1.13) | 256,192 | 254,726 | 1,467 | fig|69370.7.peg.2590 |
| Glutamate synthase [NADPH] large chain (EC 1.4.1.13) | 260,762 | 256,185 | 4,578 | fig|69370.7.peg.2591 |
| Inorganic phosphate assimilation and solubilization | ||||
| Probable low-affinity inorganic phosphate transporter | 276,078 | 277,253 | 1,176 | fig|69370.7.peg.349 |
| 87,776 | 86,481 | 1,296 | fig|69370.7.peg.2726 | |
| Phosphate regulon transcriptional regulatory protein PhoB (SphR) | 695,530 | 696,507 | 978 | fig|69370.7.peg.2090 |
| 11,84,663 | 11,85,424 | 762 | fig|69370.7.peg.1222 | |
| 750,067 | 749,384 | 684 | fig|69370.7.peg.804 | |
| Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) | 766,996 | 768,117 | 1,122 | fig|69370.7.peg.821 |
| 848,746 | 847,049 | 1,698 | fig|69370.7.peg.902 | |
| 860,264 | 858,657 | 1,608 | fig|69370.7.peg.910 | |
| Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) | 751,281 | 750,064 | 1,218 | fig|69370.7.peg.805 |
| Inorganic pyrophosphatase (EC 3.6.1.1) | 941,934 | 942,467 | 534 | fig|69370.7.peg.2325 |
| Exopolyphosphatase (EC 3.6.1.11) | 626,058 | 627,020 | 963 | fig|69370.7.peg.2018 |
| Auxin synthesis | ||||
| Tryptophan synthase alpha chain (EC 4.2.1.20) involved in auxin synthesis | 262,621 | 261,830 | 792 | fig|69370.7.peg.2593 |
| Tryptophan synthase beta chain (EC 4.2.1.20) involved in auxin synthesis | 263,952 | 262,618 | 1,335 | fig|69370.7.peg.2594 |
| Anthranilate phosphoribosyltransferase (EC 2.4.2.18) | 68,751 | 69,812 | 1,062 | fig|69370.7.peg.2400 |
| phosphoribosylanthranilate isomerase (EC 5.3.1.24) | 262,621 | 261,830 | 792 | fig|69370.7.peg.2593 |
| Monoamine oxidase (1.4.3.4) | 885,447 | 887,435 | 1,989 | fig|69370.7.peg.931 |
| 833,234 | 831,207 | 2,028 | fig|69370.7.peg.2215 | |
| Siderophore synthesis | ||||
| Siderophore -interacting protein | 179,305 | 180,231 | 927 | fig|69370.7.peg.2511 |
| ABC-type Fe3+-siderophore transport system, permease 2 component | 777,693 | 778,700 | 1,008 | fig|69370.7.peg.832 |
| ABC-type Fe3+-siderophore transport system, ATPase component | 181,137 | 180,313 | 8,25 | fig|69370.7.peg.2512 |
| ABC-type Fe3+-siderophore transport system, permease 2 component | 182,192 | 181,134 | 1,059 | fig|69370.7.peg.462 |
| ABC-type Fe3+-siderophore transport system, permease component | 183,235 | 182,189 | 1,047 | fig|69370.7.peg.661 |
| Putative ABC iron siderophore transporter, fused permease and ATPase domains | 405,489 | 403,672 | 1,818 | fig|69370.7.peg.3014 |
| ABC-type Fe3+-siderophore transport system, permease component | 776,716 | 777,696 | 981 | fig|69370.7.peg.831 |
| Putative ABC iron siderophore transporter, fused permease and ATPase domains | 587,004 | 587,765 | 762 | fig|69370.7.peg.647 |
| Potent fungal cell-wall-degrading enzymes | ||||
| Carboxymethyl cellulase (EC 3.2.1.4) | 694,440 | 695,393 | 954 | fig|69370.7.peg.868 |
| Serine protease, subtilase family (EC 3.4.21.-) | 19,362 | 15,790 | 3,573 | fig|69370.7.peg.1452 |
| Putative serine protease | 480,754 | 479,579 | 1,176 | fig|69370.7.peg.534 |
| β-hexosaminidase (EC 3.2.1.52) | 602,405 | 603,559 | 1,155 | fig|69370.7.peg.3342 |
| 103,467 | 103,277 | 1,881 | fig|69370.7.peg.534 | |
| Exopolysaccharide synthesis | ||||
| Levansucrase (EC 2.4.1.10) | 646,212 | 647,819 | 1,608 | fig|69370.7.peg.1075 |
| Polyketide Synthesis | ||||
| Regulator of polyketide synthase expression | 95,550 | 96,821 | 1,272 | fig|69370.7.peg.171 |
| Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) | 96,904 | 97,824 | 921 | fig|69370.7.peg.172 |
| 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) | 97,821 | 98,825 | 1,005 | fig|69370.7.peg.173 |
| Acyl carrier protein | 98,900 | 99,148 | 249 | fig|69370.7.peg.174 |
| 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179) | 99,214 | 100,452 | 1,239 | fig|69370.7.peg.175 |
| Chalcone synthase (EC 2.3.1.74) | 912,875 | 913,969 | 1,095 | fig|69370.7.peg.956 |