. 2020 Jul 3;11:998. doi: 10.3389/fpls.2020.00998

Table 3.

Resistance genes or QTL identified in the winter wheat panel associated with stripe rust reactions evaluated at the adult-plant stage in field environments under natural infection of Puccinia striiformis f. sp. tritici.

Gene/QTL	Traits ^a	SNP	Chr ^b	Position (Mb) ^b	-log10(p)	MAF ^c	R² ^d	Alleles ^e
QYrww.wgp.1A-1	PU18-IT	IWB8633	1AL	223	3.48	0.07	0.08	A/C
	PU18-DS	IWB8633			4.13	0.11	0.12	A/C
	MV18-IT	IWB8633			4.02	0.13	0.10	A/C
	MV18-DS	IWB8633			4.48	0.11	0.12	A/C
	PU19-IT	IWB8633			4.62	0.10	0.11	A/C
	PU19-DS	IWB8633			5.04	0.11	0.09	A/C
	MV19-DS	IWB8633			4.96	0.08	0.09	A/C
	BLUE-IT-ALL	IWB8633			3.98	0.15	0.12	A/C
	BLUE-DS-ALL	IWB8633			5.33	0.09	0.13	A/C
QYrww.wgp.1A-2	MV18-DS	IWA6710	1AL	518	3.09	0.33	0.11	T/G
	MV19-DS	IWA6710			3.29	0.33	0.09	T/G
QYrww.wgp.1D-1	MV18-IT	IWB2803	1DS	4	3.23	0.10	0.15	T/G
	MV18-DS	IWB2803			3.28	0.08	0.11	T/G
	PU19-IT	IWB2803			4.18	0.10	0.11	T/G
	PU19-DS	IWB2803			3.02	0.11	0.14	T/G
	BLUE-IT-ALL	IWB2803			3.31	0.10	0.13	T/G
	BLUE-DS-ALL	IWB2803			3.65	0.12	0.09	T/G
QYrww.wgp.1D-2	MV19-IT	IWA1787	1DS	8	4.45	0.10	0.11	C/G
QYrww.wgp.1D-3	MV18-IT	IWA3446	1DL	203	4.79	0.44	0.10	G/T
	PU18-DS	IWA3446			3.91	0.44	0.11	G/T
	PU19-DS	IWA3446			4.82	0.44	0.08	G/T
	MV19-DS	IWA3446			4.02	0.44	0.12	G/T
	BLUE-DS-ALL	IWA3446			5.23	0.44	0.11	G/T
QYrww.wgp.2A-1	PU19-IT	IWB40903	2AS	4	4.39	0.25	0.12	G/A
	PU19-DS	IWB40903			4.39	0.25	0.11	G/A
	MV18-IT	IWB40903			4.72	0.25	0.12	G/A
	MV18-DS	IWB40903.2A			4.72	0.25	0.10	G/A
	MV19-DS	IWB40903			3.62	0.25	0.12	G/A
	BLUE-IT-ALL	IWB40903			4.46	0.25	0.11	G/A
	BLUE-DS-ALL	IWB40903			4.46	0.25	0.14	G/A
QYrww.wgp.2B-1	MV18-IT	IWB47291	2BS	9	3.10	0.46	0.15	C/T
QYrww.wgp.2B-2	PU19-IT	IWB54530	2BS	47	3.33	0.12	0.11	A/G
QYrww.wgp.2B-3	MV18-DS	IWA3452	2BS	420	3.73	0.14	0.13	C/A
	PU19-DS	IWA3452			4.00	0.14	0.10	C/A
	MV19-DS	IWA3452			3.65	0.14	0.11	C/A
	BLUE-DS-ALL	IWA3452			4.58	0.14	0.14	C/A
QYrww.wgp.2D-1	PU18-IT	IWB22615	2DS	5	8.90	0.29	0.12	C/T
	PU18-DS	IWB22615			3.82	0.29	0.14	C/T
	MV19-IT	IWB22615			6.84	0.29	0.13	C/T
	MV19-DS	IWB22615			9.23	0.29	0.13	C/T
	BLUE-IT-ALL	IWB22615			5.15	0.29	0.12	C/T
	BLUE-DS-ALL	IWB22615			7.41	0.29	0.14	C/T
QYrww.wgp.2D-2	PU18-IT	IWB57369.2D	2DS	12	5.97	0.28	0.17	C/T
	PU18-DS	IWB57369.2D			4.25	0.28	0.20	C/T
	MV18-DS	IWB57369			4.25	0.28	0.11	C/T
	MV18-IT	IWB57369			7.11	0.28	0.18	C/T
	MV19-DS	IWB57369			7.11	0.28	0.12	C/T
	BLUE-IT-ALL	IWB57369			3.47	0.28	0.16	C/T
	BLUE-DS-ALL	IWB57369			3.47	0.28	0.17	C/T
QYrww.wgp.2D-3	PU18-IT	IWB5467	2DS	20	3.99	0.08	0.09	C/A
	PU19-DS	IWB5467			3.05	0.08	0.11	C/A
	MV19-IT	IWB5467			3.51	0.08	0.13	C/A
	MV19-DS	IWB5467			3.03	0.08	0.12	C/A
QYrww.wgp.3B	MV19-IT	IWB8118	3BL	796	4.92	0.06	0.10	C/A
QYrww.wgp.3D	PU18-IT	IWA3531	3DS	26	3.45	0.09	0.11	C/A
QYrww.wgp.4A-3	MV19-IT	IWA559	4AL	699	4.02	0.23	0.08	A/G
QYrww.wgp.6A-2	MV18-DS	IWA214	6AL	600	3.66	0.50	0.09	T/C
QYrww.wgp.6B	MV19-IT	IWA1017	6BL	528	4.01	0.23	0.08	A/G
QYrww.wgp.7A-1	MV18-DS	IWB49467	7AS	57	3.36	0.06	0.15	T/C
	PU19-DS	IWB49467			4.49	0.06	0.23	T/C
	BLUE-IT-ALL	IWB49467			4.48	0.06	0.18	T/C
	BLUE-DS-ALL	IWB49467			3.44	0.06	0.14	T/C
QYrww.wgp.7A-2	BLUE-IT-ALL	IWB9609	7AS	19	3.10	0.09	0.13	G/T
QYrww.wgp.7B-1	MV18-IT	IWA4362	7BL	435	3.16	0.08	0.09	C/T
	MV19-DS	IWA4362			3.35	0.08	0.11	C/T

The winter wheat panel was evaluated at the adult-plant stage in the fields at Pullman and Mount Vernon in 2017 and 2018, referred as PU17, PU18, MV17, and MV18, respectively.

Chromosomes and positions of markers were determined according to IWGSC RefSeq v.1.1.

MAF, minor allele frequency.

R² indicated phenotypic variance explained by the associated marker.

Resistance-associated allele was labeled in bold and underlined character.