Table 4.
Frequencies (%) of stripe rust resistance genes or quantitative trait loci (QTL) identified with reported markers or through genotyping by multiplexed sequencing genome-wide association study (GMS-GWAS) in the winter wheat panel and nurseries.
| Gene/QTL | Frequencies (%) of genes or QTL in nurseries | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Panel (857) | 1711_WCDN (165) | 1709_WWCMN (204) | 1701_WRDN (185) | 1702_WEDN (92) | 1726_WURN (16) | 1712_WHWN (86) | 1715_WEWN (36) | 1716_WSWN (30) | 1718_WESR (43) | |
| Genes/QTL identified by markers | ||||||||||
| Yr5 | 0.12 | 0.61 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| Yr9 | 8.05 | 4.85 | 5.88 | 10.27 | 10.87 | 0.00 | 15.12 | 19.44 | 0.00 | 0.00 |
| Yr10 | 22.75 | 31.52 | 20.59 | 31.35 | 0.00 | 25.00 | 18.60 | 16.67 | 30.00 | 18.60 |
| Yr15 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| Yr17 | 29.05 | 39.39 | 23.53 | 15.14 | 34.78 | 12.50 | 60.47 | 36.11 | 0.00 | 20.93 |
| Yr18 | 10.62 | 7.88 | 8.82 | 7.03 | 0.00 | 81.25 | 0.00 | 5.56 | 46.67 | 41.86 |
| Yr27 | 2.22 | 3.03 | 0.98 | 4.32 | 1.09 | 0.00 | 0.00 | 0.00 | 6.67 | 2.33 |
| Yr30 | 4.90 | 4.24 | 15.69 | 0.54 | 0.00 | 0.00 | 2.33 | 0.00 | 0.00 | 0.00 |
| Yr46 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| YrSP | 2.92 | 3.64 | 1.47 | 2.70 | 3.26 | 0.00 | 8.14 | 2.78 | 0.00 | 0.00 |
| YrTr1 | 1.75 | 1.82 | 0.00 | 3.78 | 1.09 | 12.50 | 2.33 | 0.00 | 0.00 | 0.00 |
| Yr76 | 1.75 | 1.82 | 0.98 | 3.78 | 3.26 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| Yr78 | 9.33 | 4.85 | 2.94 | 20.00 | 29.35 | 0.00 | 2.33 | 0.00 | 0.00 | 0.00 |
| QYrMa.wgp-1AS | 17.85 | 12.73 | 13.73 | 43.78 | 1.09 | 25.00 | 12.79 | 5.56 | 0.00 | 11.63 |
| QYr.wpg-1B.1 | 17.85 | 12.73 | 14.71 | 32.97 | 13.04 | 31.25 | 15.12 | 13.89 | 6.67 | 9.30 |
| QYrel.wgp-2BS | 38.86 | 66.06 | 16.18 | 51.35 | 3.26 | 100.00 | 48.84 | 33.33 | 26.67 | 34.88 |
| QYrsk.wgp-3BS | 34.42 | 18.18 | 42.16 | 53.51 | 2.17 | 56.25 | 43.02 | 22.22 | 26.67 | 37.21 |
| QYrsk.wgp-4BL | 7.23 | 15.15 | 3.92 | 3.78 | 7.61 | 12.50 | 10.47 | 0.00 | 13.33 | 0.00 |
| Genes/QTL identified by GMS-GWAS | ||||||||||
| Qyrww.wgp.1A-1 | 11.09 | 6.06 | 5.88 | 18.38 | 0.00 | 50.00 | 18.60 | 0.00 | 20.00 | 20.93 |
| Qyrww.wgp.1A-2 | 32.32 | 11.52 | 39.71 | 35.68 | 39.13 | 56.25 | 32.56 | 30.56 | 30.00 | 41.86 |
| Qyrww.wgp.1A-3 | 6.42 | 4.24 | 2.45 | 13.51 | 0.00 | 31.25 | 8.14 | 8.33 | 10.00 | 0.00 |
| Qyrww.wgp.1B | 15.17 | 4.24 | 3.43 | 53.51 | 6.52 | 31.25 | 3.49 | 0.00 | 6.67 | 2.33 |
| Qyrww.wgp.1D-1 | 9.45 | 7.88 | 12.25 | 14.05 | 0.00 | 6.25 | 4.65 | 13.89 | 20.00 | 2.33 |
| Qyrww.wgp.1D-2 | 55.78 | 52.73 | 42.65 | 41.08 | 51.09 | 93.75 | 100.00 | 100.00 | 90.00 | 39.53 |
| Qyrww.wgp.1D-3 | 6.65 | 6.06 | 3.43 | 3.78 | 3.26 | 12.50 | 15.12 | 19.44 | 13.33 | 9.30 |
| Qyrww.wgp.2A-1 | 23.92 | 4.85 | 20.59 | 20.54 | 25.00 | 31.25 | 56.98 | 30.56 | 56.67 | 27.91 |
| Qyrww.wgp.2A-2 | 6.77 | 7.88 | 2.94 | 10.27 | 5.43 | 18.75 | 6.98 | 5.56 | 3.33 | 6.98 |
| Qyrww.wgp.2B-1 | 53.44 | 55.15 | 65.69 | 26.49 | 41.30 | 37.50 | 66.28 | 66.67 | 73.33 | 86.05 |
| Qyrww.wgp.2B-2 | 12.14 | 19.39 | 15.69 | 9.73 | 0.00 | 6.25 | 12.79 | 8.33 | 13.33 | 6.98 |
| Qyrww.wgp.2B-3 | 14.12 | 0.00 | 44.12 | 14.05 | 1.09 | 0.00 | 2.33 | 5.56 | 0.00 | 0.00 |
| Qyrww.wgp.2B-4 | 6.10 | 3.40 | 3.40 | 6.50 | 1.20 | 0.00 | 1.20 | 8.30 | 23.3 | 4.70 |
| Qyrww.wgp.2D-1 | 26.60 | 9.09 | 33.82 | 26.49 | 39.13 | 0.00 | 50.00 | 41.67 | 3.33 | 0.00 |
| Qyrww.wgp.2D-2 | 27.54 | 8.48 | 24.02 | 24.86 | 39.13 | 50.00 | 50.00 | 69.44 | 0.00 | 34.88 |
| Qyrww.wgp.2D-3 | 10.62 | 9.70 | 3.43 | 6.49 | 6.52 | 43.75 | 11.63 | 0.00 | 60.00 | 34.88 |
| Qyrww.wgp.2D-4 | 4.43 | 0.00 | 0.00 | 2.70 | 0.00 | 12.50 | 8.14 | 44.44 | 0.00 | 18.60 |
| Qyrww.wgp.3A | 5.37 | 3.03 | 0.00 | 4.32 | 10.87 | 0.00 | 22.09 | 11.11 | 0.00 | 0.00 |
| Qyrww.wgp.3B | 3.38 | 0.00 | 0.00 | 4.32 | 0.00 | 43.75 | 0.00 | 8.33 | 16.67 | 13.95 |
| Qyrww.wgp.3D | 26.60 | 12.12 | 10.78 | 81.08 | 26.09 | 0.00 | 5.81 | 19.44 | 0.00 | 0.00 |
| Qyrww.wgp.4A-1 | 7.00 | 6.06 | 4.90 | 3.78 | 0.00 | 37.50 | 11.63 | 22.22 | 0.00 | 20.93 |
| Qyrww.wgp.4A-2 | 13.19 | 4.85 | 10.78 | 27.57 | 20.65 | 6.25 | 6.98 | 0.00 | 10.00 | 6.98 |
| Qyrww.wgp.4A-3 | 21.47 | 29.70 | 25.00 | 25.41 | 27.17 | 18.75 | 10.47 | 0.00 | 0.00 | 0.00 |
| Qyrww.wgp.4B | 6.77 | 3.64 | 5.88 | 5.41 | 3.26 | 25.00 | 12.79 | 0.00 | 16.67 | 16.28 |
| Qyrww.wgp.5A | 6.88 | 5.45 | 8.33 | 2.16 | 9.78 | 12.50 | 4.65 | 8.33 | 10.00 | 18.60 |
| Qyrww.wgp.5B | 9.92 | 9.09 | 2.45 | 5.95 | 19.57 | 50.00 | 11.63 | 11.11 | 20.00 | 18.60 |
| Qyrww.wgp.5D | 7.58 | 3.64 | 4.41 | 1.62 | 13.04 | 43.75 | 17.44 | 11.11 | 10.00 | 13.95 |
| Qyrww.wgp.6A-1 | 41.07 | 63.03 | 42.65 | 40.54 | 38.04 | 25.00 | 32.56 | 13.89 | 23.33 | 16.28 |
| Qyrww.wgp.6A-2 | 48.07 | 59.39 | 49.02 | 51.35 | 53.26 | 50.00 | 32.56 | 44.44 | 30.00 | 20.93 |
| Qyrww.wgp.6B | 7.70 | 7.27 | 0.49 | 2.16 | 14.13 | 43.75 | 0.00 | 0.00 | 33.33 | 44.19 |
| Qyrww.wgp.7A-1 | 5.37 | 3.64 | 2.45 | 1.62 | 9.78 | 43.75 | 2.33 | 22.22 | 3.33 | 11.63 |
| Qyrww.wgp.7A-2 | 7.35 | 14.55 | 7.35 | 3.24 | 4.35 | 0.00 | 12.79 | 0.00 | 10.00 | 0.00 |
| Qyrww.wgp.7B-1 | 7.00 | 0.00 | 0.00 | 15.68 | 3.26 | 12.50 | 12.79 | 19.44 | 16.67 | 6.98 |
| Qyrww.wgp.7B-2 | 13.30 | 13.94 | 6.86 | 24.32 | 26.09 | 0.00 | 9.30 | 0.00 | 0.00 | 0.00 |
| Qyrww.wgp.7B-3 | 13.30 | 19.39 | 4.90 | 3.78 | 13.04 | 68.75 | 27.91 | 22.22 | 16.67 | 11.63 |
| Mean freq. (%) | 14.76 | 13.24 | 12.86 | 17.29 | 12.47 | 24.88 | 17.42 | 15.72 | 14.65 | 13.87 |
| No. of genes/QTL | 51 | 45 | 43 | 48 | 37 | 35 | 43 | 33 | 32 | 31 |
| Rate of gene/entry | 0.06 | 0.27 | 0.21 | 0.56 | 0.40 | 2.10 | 0.50 | 0.91 | 1.07 | 0.72 |