Table 2:

Mean PR-AUC over 16 cancers for recovering methylation-driving genes according to the imputed relative to the actual gene expression data

Missing rate	SVD	TOBMI	Lasso	TDimpute-self	TDimpute
10%	0.972	0.971	0.965	0.980	0.983
30%	0.867	0.867	0.842	0.908	0.927
50%	0.737	0.703	0.702	0.807	0.848
70%	0.587	0.521	0.565	0.678	0.749
90%	0.391	0.308	0.390	0.397	0.601

Mean performance across 16 imputed cancer datasets is reported. TDimpute had the best results in all comparisons. All differences were statistically significant (pairedt-test, P-value < 0.05) between TDimpute and other methods.