Table 4:
The average enrichment factors of top 100 prognosis-related genes overlapped with the genes collected in the Human Protein Atlas.
| Missing rate | SVD | TOBMI | Lasso | TDimpute-self | TDimpute |
|---|---|---|---|---|---|
| 10% | 0.901 | 0.912 | 0.912 | 0.923 | 0.927 |
| 30% | 0.711 | 0.747 | 0.742 | 0.768 | 0.784 |
| 50% | 0.561 | 0.595 | 0.590 | 0.627 | 0.652 |
| 70% | 0.428 | 0.454 | 0.449 | 0.487 | 0.523 |
| 90% | 0.286 | 0.287 | 0.292 | 0.311 | 0.376 |
All differences were statistically significant (paired t-test, P-value < 0.05) between TDimpute and other methods. TDimpute had the best results in all comparisons.