Table 1.
Differentially expressed lncRNAs in normal weight affected by CRC (NwCRC), obese (Ob), and obese affected by CRC (ObCRC) individuals vs. healthy lean control.
| Log2FC (FDR ≤ 5%) | ||||
|---|---|---|---|---|
| Gene Name | Entrez Gene ID | NwCRC | Ob | ObCRC |
| Novel lncRNA | ||||
| AC004241.1 | 4.4723 | |||
| AC004477.3 | 1.9133 | |||
| AC006504.5 | 2.3449 | |||
| AC007098.1 | 6.6690 | |||
| AC008105.3 | 4.2391 | 4.4356 | ||
| AC009022.1 | 8.7676 | 8.7671 | ||
| AC010457.1 | 2.2489 | 2.8844 | ||
| AC016582.2 | 5.1047 | |||
| AC021092.1 | 1.1310 | 1.0531 | ||
| AC022007.1 | 9.0501 | 9.3198 | ||
| AC023421.1 | 5.4800 | |||
| AC061992.1 | −4.2812 | |||
| AC068473.5 | 1.4616 | |||
| AC068888.1 | 7.4252 | 8.3630 | ||
| AC084757.3 | −2.9022 | |||
| AC092279.1 | −5.9393 | |||
| AC099518.3 | −7.8032 | |||
| AC109460.3 | 6.9064 | 6.8707 | 6.2148 | |
| AC114956.3 | 2.6267 | |||
| AC139256.1 | 2.8280 | |||
| AC144548.1 | −1.0320 | |||
| AC141930.1 | 3.2551 | |||
| AL031429.1 | 3.3503 | 3.0813 | 4.1653 | |
| AL078612.1 | 2.7046 | |||
| AL138828.1 | 2.3053 | |||
| AL138963.4 | 2.2073 | |||
| AL139260.1 | 7.4131 | 6.2839 | 7.3094 | |
| AC016582.1 | 5.2659 | |||
| AL161772.1 | 1.9376 | |||
| AL355607.2 | 1.9507 | |||
| AL356056.1 | 5.4758 | 6.9848 | ||
| AL591848.3 | 1.5321 | |||
| AP000317.2 | −11.2572 | |||
| AP000790.1 | 6.1063 | |||
| FP236383.3 | 8.4412 | |||
| Known lncRNA | ||||
| AGAP11 | 119385 | 1.8547 | ||
| APTR | 100505854 | 3.3044 | 4.0329 | 2.8546 |
| ARHGEF7-AS2 | 100874238 | 4.6621 | ||
| BCYRN1 | 618 | 3.1417 | ||
| CFLAR-AS1 | 65072 | −6.3218 | ||
| DLGAP1-AS1 | 649446 | 1.4003 | ||
| FAM198B-AS1 | 285505 | 3.8088 | 4.4575 | 4.6582 |
| FAM27E3 | 100131997 | 3.9401 | ||
| FOXP4-AS1 | 101060264 | 6.3680 | ||
| H19 | 283120 | −22.6445 | ||
| HIF1A-AS1 | 100750246 | 3.7185 | 2.9894 | |
| HOXB-AS3 | 404266 | −7.1867 | ||
| LINC00486 | 285045 | 6.9600 | ||
| LINC00926 | 283663 | 4.5816 | 4.6596 | |
| LINC00968 | 100507632 | 8.9218 | 8.3768 | 8.4248 |
| LINC01106 | 151009 | 19.5614 | 19.7102 | 22.0251 |
| LINC01106 | 151009 | 20.9418 | 20.6120 | 19.8254 |
| LINC01140 | 339524 | −3.7389 | ||
| LINC01140 | 339524 | −3.5970 | ||
| LINC01184 | 644873 | −8.4369 | ||
| LINC01239 | 441389 | −2.1368 | ||
| LINC01291 | 102724515 | −21.0782 | ||
| LINC01348 | 731656 | 8.9118 | 8.2512 | 7.3795 |
| LINC01619 | 256021 | −8.8258 | ||
| LNCOG | 105369848 | 1.8031 | ||
| LUCAT1 | 100505994 | 9.5244 | ||
| MALINC1 | 100505636 | 2.0735 | ||
| MAP4K3-DT | 728730 | 5.1283 | ||
| MINCR | 100507316 | 3.7292 | 4.1920 | |
| MIR100HG | 399959 | −8.2382 | −21.7228 | |
| MIR100HG | 399959 | −9.8115 | ||
| MIR3142HG | 107075116 | 3.1109 | ||
| MIR4435-2HG | 541471 | 9.2841 | 9.7786 | 9.1337 |
| MIR4435-2HG | 541471 | −9.4517 | ||
| MIR4435-2HG | 541471 | −8.6134 | ||
| MSC-AS1 | 100132891 | −23.2039 | ||
| NUTM2A-AS1 | 728190 | −6.5505 | ||
| NUTM2A-AS1 | 728190 | 9.2961 | ||
| OLMALINC | 90271 | −2.9871 | ||
| PGM5P3-AS1 | 101929127 | −7.6345 | ||
| RASSF8-AS1 | 100506451 | 19.9364 | 22.0934 | |
| RASSF8-AS1 | 100506451 | −9.9462 | ||
| SCAT8 | 112935969 | −3.9716 | ||
| SLC14A2-AS1 | 101927980 | 6.4340 | 9.1498 | |
| SNHG16 | 100507246 | 4.6908 | 4.6101 | 5.3027 |
| SNHG29 | 125144 | −7.6114 | ||
| SNORD3C | 780853 | 6.8661 | ||
| STAG3L5P-PVRIG2P-PILRB | 101752399 | 20.8685 | ||
| TMEM161B-AS1 | 100505894 | 4.6379 | ||
| TPRG1-AS1 | 100874043 | −1.6872 | ||
| TPTEP1 | 387590 | 7.4005 | ||
| TPT1-AS1 | 100190939 | −6.8438 | ||
| UBA6-AS1 | 550112 | −8.0421 | ||
| USP9Y | 8287 | 8.9477 | ||
| XIST | 7503 | −25.1297 | ||
| ZFAS1 | 441951 | −5.2589 | ||
| ZNF295-AS1 | 150142 | 1.8551 | ||
| ZNF883 | 169834 | 6.9421 | 7.4847 | |