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. 2020 Jul 3;11:638. doi: 10.3389/fgene.2020.00638

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Copyright © 2020 Li, Lhundrup, Guo, Dol, Chen, Gao, Chemi, Zhang, Wang, Nyema, Dawa and Li.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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The circular plots for heading date in Lhasa (HD_LS) (A), plant height in Namling (PH_NM) (B), spike length in Nyingchi (SL_NC) (C), and spike length in Namling (SL_NM) (D). From the outer circle to the inner circle, a is for the barley genome; b is for the SNP density; c is for the manhattan plot from generalized linear model (GLM); d is for the manhattan plot from mixed linear model (MLM); e is for the manhattan plot from EigenGWAS under the tenth eigenvector (EV10); f is for the manhattan plot from EigenGWAS under the seventh eigenvector (EV7); g is for the manhattan plot from EigenGWAS under the fifth eigenvector (EV5); h is for the manhattan plot from EigenGWAS under the third eigenvector (EV3); and i is for the manhattan plot from EigenGWAS under the second eigenvector (EV2). The SNP positions associated with the trait of interest were marked in black font; of which with pleotropic effects were highlighted in red font; and detected by EigenGWAS were highlighted in yellow background.