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. 2020 Jun 13;21(12):4217. doi: 10.3390/ijms21124217

Figure 1.

Figure 1

Flowchart of the RNA-seq wet-lab and in silico analyses. The main analytic pipeline contains: preprocessing quality control, mapping reads, biological replicates validation, differential genes and long noncoding RNAs (lncRNAs) expression analysis, alternative splicing events identification, allele-specific expression, RNA editing sites and real-time PCR validation. LPS—lipopolysaccharide; SNV—single nucleotide variant; AS—alternative splicing; PCA—principal component analysis.