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. 2020 Jun 17;21(12):4326. doi: 10.3390/ijms21124326

Table 1.

The predict targets of miR828 and annotation by psRNATarget using Brassica rapa cds library (version 1.1, released on 30 August 2011).

Target Gene ID Alignment Target Gene Annotation Expect 1 UPE 2
Bra001917 miR828    22 ACCUUAUGGGUAAAUUCGUUCU 1
Target    310 UGGAACACCCAUCUGAGCAAGA 331		 ATMYB90/PAP2 2.5 13.531
Bra004162 miR828    22 ACCUUAUGGGUAAAUUCGUUCU 1
Target    310 UGGAACACCCAUUUGAGUAAGA 331		 MYB domain protein MYB90/ PAP2 2.0 16.874
Bra004167 miR828    22 ACCUUAUGGGUAAAUUCGUUCU 1
Target    1071 UCGAAAGCCCAUUGAAGUAAGA 1092		 protein kinase family protein 3.0 19.602
Bra022602 miR828    22 ACCUUAUGGGUAAAUUCGUUCU 1
Target    322 UGGAAUACCCAUUUGAACAAGA 343		 MYB domain protein MYB82 2.0 16.804
Bra029113 miR828    22 ACCUUAUGGGUAAAUUCGUUCU 1
Target    322 UGGAAUACACAUUUGAACAAGA 343		 MYB domain protein MYB82 3.0 13.444
Bra039763 miR828    22 ACCUUAUGGGUAAAUUCGUUCU 1
Target    310 UGGAACACCCAUUUGAGUAAGA 331		 PAP1 2.0 10.13
BraTAS4 miRNA    22 ACCUUAUGGGUAAAUUCGUUCU 1
Target    663 UGGAAUAUUCAUUUGAGCAAGA 684		 Non-coding RNA (Trans-acting siRNA gene 4) 1.5 N/A

1 Expect value, maximum cutoff of score based on given scoring schema. 2 UPE value, Target accessibility, the energy required to unpair target and small RNA.