Table 2.
The annotation of the hub genes with co-expressed genes ≥11 identified in PPI analysis.
| Gene ID | PPI number | 11-0-2 FDR | 11-0-2 log2FC | 11-0-4 FDR | 11-0-4 log2FC | 25-0-2 FDR | 25-0-2 log2FC | 25-0-4 FDR | 25-0-4 log2FC | annotation |
|---|---|---|---|---|---|---|---|---|---|---|
| Os06g0114000 | 14 | 3.58 × 10−23 | −2.70 | 1.01 × 10−10 | −1.77 | 1.68 × 10−2 | 0.85 | 6.92 × 10−1 | 0.24 | TCP-1/cpn60 chaperonin family |
| Os02g0102900 | 14 | 9.78 × 10−6 | −1.43 | 3.02 × 10−6 | −1.46 | 2.67 × 10−7 | −1.92 | 1.86 × 10−2 | −1.09 | TCP-1/cpn60 chaperonin family |
| Os03g0285800 | 14 | 1.37 × 10−12 | −3.42 | 1.34 × 10−9 | −2.75 | 5.18 × 10−10 | 1.90 | 9.27 × 10−1 | 0.08 | protein tyrosine kinase |
| Os02g0102950 | 14 | 3.88 × 10−2 | −1.38 | 7.47 × 10−3 | −1.77 | 3.81 × 10−3 | −2.12 | 1.30 × 10−1 | −1.22 | RuBisCO large subunit-binding protein subunit beta |
| Os03g0129300 | 12 | 5.20 × 10−30 | −4.61 | 6.88 × 10−22 | −4.15 | 9.50 × 10−1 | 0.03 | 7.49 × 10−1 | −0.22 | glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain |
| Os03g0334000 | 11 | 1.05 × 10−14 | 2.43 | 9.65 × 10−19 | 2.60 | 1.28 × 10−2 | 0.85 | 4.65 × 10−1 | 0.40 | protein tyrosine kinase |
| Os01g0723000 | 11 | 4.86 × 10−18 | Inf | — | — | 1.88 × 10−1 | −2.83 | 4.28 × 10−1 | −1.37 | elongation factor Tu GTP binding domain |
| Os01g0723025 | 11 | 4.43 × 10−86 | 7.51 | 8.80 × 10−16 | 4.53 | 3.13 × 10−1 | −1.95 | 5.01 × 10−1 | −1.09 | elongation factor Tu domain 2 |
| Os03g0334050 | 11 | 1.28 × 10−17 | 2.42 | 2.08 × 10−15 | 2.23 | 3.10 × 10−2 | 0.71 | 5.27 × 10−1 | 0.35 | protein tyrosine kinase |
Note: ‘—’ indicates low expressive level of genes; ‘Inf’ indicates extremely high expressive level.