Table 1.
Primer sequences and qPCR conditions used to assess the gene expression of ATF4, HSPA5 and DDIT3, GAPDH and B2M were used as housekeeping controls.
| Gene ID | GenBank | Primer sequence (5′–3′) | Annealing temperature | Amplicon length | Melting temperature |
|---|---|---|---|---|---|
| ATF4 | NM_001675.4 | Sense: ATCCTGCTTGCTGTTGTTGG Anti-sense: GTTCTCCAGCGACAAGGCTA |
61.1°C | 88 | 83.00°C |
| HSPA5 | NM_005347.4 | Sense: TTCTGCTGTATCCTCTTCACCAGT Anti-sense: TGTTCAACCAATTATCAGCAAACTC |
61.1°C | 73 | 78.50°C |
| DDIT3 | NM_001195057.1 | Sense: TCTCCTTCATGCGCTGCTTT Anti-sense: AGAACCAGGAAACGGAAACAGA |
57.0°C | 67 | 80.50°C |
| GAPDH | NM_001289746.1 | Sense: CGGGAAGCTTGTGATCAATGG Anti-sense: GGCAGTGATGGCATGGACTG |
55.0°C | 358 | 83.50°C |
| B2M | NM_004048.2 | Sense: AGCAGCATCATGGAGGTTTG Anti-Sense: AGCCCTCCTAGAGCTACCTG |
59.0°C | 229 | 80.50°C |
The specific primer sequences for ATF4, HSPA5 and DDIT3 were obtained from Oslowski and Urano (2011), whereas GAPDH and B2M primers were in-house designed using BLAST software found on the NCBI website, with the NCBI reported sequences.
This work is licensed under a