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. 2020 May 1;160(2):171–180. doi: 10.1530/REP-19-0539

Table 1.

Primer sequences and qPCR conditions used to assess the gene expression of ATF4, HSPA5 and DDIT3, GAPDH and B2M were used as housekeeping controls.

Gene ID GenBank Primer sequence (5′–3′) Annealing temperature Amplicon length Melting temperature
ATF4 NM_001675.4 Sense: ATCCTGCTTGCTGTTGTTGG
Anti-sense: GTTCTCCAGCGACAAGGCTA
61.1°C 88 83.00°C
HSPA5 NM_005347.4 Sense: TTCTGCTGTATCCTCTTCACCAGT
Anti-sense: TGTTCAACCAATTATCAGCAAACTC
61.1°C 73 78.50°C
DDIT3 NM_001195057.1 Sense: TCTCCTTCATGCGCTGCTTT
Anti-sense: AGAACCAGGAAACGGAAACAGA
57.0°C 67 80.50°C
GAPDH NM_001289746.1 Sense: CGGGAAGCTTGTGATCAATGG
Anti-sense: GGCAGTGATGGCATGGACTG
55.0°C 358 83.50°C
B2M NM_004048.2 Sense: AGCAGCATCATGGAGGTTTG
Anti-Sense: AGCCCTCCTAGAGCTACCTG
59.0°C 229 80.50°C

The specific primer sequences for ATF4, HSPA5 and DDIT3 were obtained from Oslowski and Urano (2011), whereas GAPDH and B2M primers were in-house designed using BLAST software found on the NCBI website, with the NCBI reported sequences.