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. 2020 Jul 7;32(1):107862. doi: 10.1016/j.celrep.2020.107862
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Mouse monoclonal anti-Nkx6.1 Developmental Studies Hybridoma Bank Cat# F55A12; RRID: AB_532379
Rabbit polyclonal anti-insulin abcam Cat# ab210560

Deposited Data

4C-seq data This paper ENA: PRJEB36984
UCSC session with 4C-seq processed bedgraph tracks (smoothened to windows containing 30 fragments) This paper http://genome-euro.ucsc.edu/cgi-bin/hgTracks?db=danRer7&lastVirtModeType=default&lastVirtModeExtraState=&virtModeType=default&virtMode=0&nonVirtPosition=&position=chr24%3A40302659%2D40356334&hgsid=239502130_A8rG2FyY9qsTK3VDD7dRiuUMjRi5

Experimental Models: Organisms/Strains

Zebrafish: WT AB This paper N/A
Zebrafish: WT TU This paper N/A
Zebrafish: nog2ED301 This paper N/A
Zebrafish: nog2mut This paper N/A
Zebrafish: nog2E3del1/del2 This paper N/A
Zebrafish: Tg (Ins:GFP) This paper N/A
Zebrafish: nog2E1:GFP This paper N/A
Zebrafish: nog2E2:GFP This paper N/A
Zebrafish: nog2E3:GFP This paper N/A
Zebrafish: NOGD10:GFP This paper N/A
Zebrafish: NOGD5:GFP This paper N/A
Zebrafish: NOGD6:GFP This paper N/A
Zebrafish: NOGD9:GFP This paper N/A
Zebrafish: mD10:GFP This paper N/A

Oligonucleotides

See Table S1 for primers and oligonucleotides used in this paper

Recombinant DNA

Zebrafish Enhancer Detection (ZED) Vector Bessa et al., 2009 N/A
pminiTol2- Z48-Gw-CARGFP Bessa et al., 2009 N/A
pDR274 Hwang et al., 2013 Addgene #42250
nog2E3:GFPnog2 This paper N/A

Software and Algorithms

ImageJ Schneider et al., 2012 https://imagej.nih.gov/ij/
Graphpad Prism N/A https://www.graphpad.com/
bowtie Langmead et al., 2009 http://bowtie-bio.sourceforge.net/index.shtml
Bedtools Quinlan and Hall., 2010 https://github.com/arq5x/bedtools2
4C-seq processing perl script This paper Available upon request to Juan Tena (jjtenagu@upo.es)

Other

Fastqc reports from the raw 4C-seq fastq files from this study This paper Data S1