Antibodies |
|
Mouse monoclonal anti-Nkx6.1 |
Developmental Studies Hybridoma Bank |
Cat# F55A12; RRID: AB_532379
|
Rabbit polyclonal anti-insulin |
abcam |
Cat# ab210560 |
|
Deposited Data |
|
4C-seq data |
This paper |
ENA: PRJEB36984 |
UCSC session with 4C-seq processed bedgraph tracks (smoothened to windows containing 30 fragments) |
This paper |
http://genome-euro.ucsc.edu/cgi-bin/hgTracks?db=danRer7&lastVirtModeType=default&lastVirtModeExtraState=&virtModeType=default&virtMode=0&nonVirtPosition=&position=chr24%3A40302659%2D40356334&hgsid=239502130_A8rG2FyY9qsTK3VDD7dRiuUMjRi5 |
|
Experimental Models: Organisms/Strains |
|
Zebrafish: WT AB |
This paper |
N/A |
Zebrafish: WT TU |
This paper |
N/A |
Zebrafish: nog2ED301 |
This paper |
N/A |
Zebrafish: nog2mut |
This paper |
N/A |
Zebrafish: nog2E3del1/del2 |
This paper |
N/A |
Zebrafish: Tg (Ins:GFP) |
This paper |
N/A |
Zebrafish: nog2E1:GFP |
This paper |
N/A |
Zebrafish: nog2E2:GFP |
This paper |
N/A |
Zebrafish: nog2E3:GFP |
This paper |
N/A |
Zebrafish: NOGD10:GFP |
This paper |
N/A |
Zebrafish: NOGD5:GFP |
This paper |
N/A |
Zebrafish: NOGD6:GFP |
This paper |
N/A |
Zebrafish: NOGD9:GFP |
This paper |
N/A |
Zebrafish: mD10:GFP |
This paper |
N/A |
|
Oligonucleotides |
|
See Table S1 for primers and oligonucleotides used in this paper |
|
Recombinant DNA |
|
Zebrafish Enhancer Detection (ZED) Vector |
Bessa et al., 2009 |
N/A |
pminiTol2- Z48-Gw-CARGFP |
Bessa et al., 2009 |
N/A |
pDR274 |
Hwang et al., 2013 |
Addgene #42250 |
nog2E3:GFPnog2 |
This paper |
N/A |
|
Software and Algorithms |
|
ImageJ |
Schneider et al., 2012 |
https://imagej.nih.gov/ij/ |
Graphpad Prism |
N/A |
https://www.graphpad.com/ |
bowtie |
Langmead et al., 2009 |
http://bowtie-bio.sourceforge.net/index.shtml |
Bedtools |
Quinlan and Hall., 2010 |
https://github.com/arq5x/bedtools2 |
4C-seq processing perl script |
This paper |
Available upon request to Juan Tena (jjtenagu@upo.es) |
|
Other |
|
Fastqc reports from the raw 4C-seq fastq files from this study |
This paper |
Data S1 |