Table 4.
Comparison of resource usage between complete assembly and partitioned assembly for the Zymo datasets. The best values are highlighted in bold text.
| Dataset | Performance metric | metaFlye assembly |
Canu assembly |
||
|---|---|---|---|---|---|
| Complete assembly | Partitioned assembly | Complete assembly | Partitioned assembly | ||
| Zymo-1Y2B | Assembly time (h) | 12.15 | 9.25 | 74.61 | 58.01 |
| Memory usage (GB) | 35.34 | 24.21 | 13.18 | 8.01 | |
| Zymo-1Y3B | Assembly time (h) | 15.40 | 11.96 | 86.51 | 78.33 |
| Memory usage (GB) | 36.53 | 22.16 | 18.43 | 7.85 | |
| Zymo-2Y2B | Assembly time (h) | 13.41 | 10.43 | 75.20 | 61.12 |
| Memory usage (GB) | 35.41 | 23.42 | 19.45 | 11.46 | |
| Zymo-2Y3B | Assembly time (h) | 16.51 | 13.49 | 87.22 | 82.93 |
| Memory usage (GB) | 35.81 | 23.81 | 22.15 | 7.94 | |
| Zymo-2Y4B | Assembly time (h) | 20.74 | 15.63 | 102.13 | 101.16 |
| Memory usage (GB) | 54.84 | 21.65 | 25.78 | 12.44 | |
| Zymo-All (Nicholls et al., 2019) | Assembly time (h) | 45.95 | 36.45 | 437.99 | 258.00 |
| Memory usage (GB) | 129.36 | 16.19 | 108.50 | 21.76 | |
Note: Assembly time for partitioned assemblies includes the CPU time elapsed for binning using MetaBCC-LR and metagenomics assembly.