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Evaluation of mapping accuracy in the centromeric region of human chromosome X
| Window length (w) | Method | Unmapped reads (%) | Incorrectly mapped reads (%) |
|---|---|---|---|
| 10 | Winnowmap | 0.0 | 0.0 |
| Minimap2 | 0.0 | 3.6 | |
| 25 | Winnowmap | 0.0 | 0.0 |
| Minimap2 | 0.0 | 14.5 | |
| 50 | Winnowmap | 0.0 | 0.0 |
| Minimap2 | 0.6 | 34.7 |
The best numbers are highlighted in bold.
Note: Here, we consider only those reads in dataset D1 which were sampled from centromeric repeat array.
