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. 2020 Jun 20;9(6):774. doi: 10.3390/plants9060774

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© 2020 by the authors.

Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).

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Gene co-expression network developed to analyze the connectivity between isoflavonoid biosynthetic pathway and MYB genes. Genes shown with the same color show a similar transcriptional regulation in all data analyzed. Grey lines indicate the interconnections between isoflavonoid and MYB genes, and red lines link probesets with gene names or Kazusa codes of genes. The co-expression network was visualized using Cytoscape and analyzed using the NetworkAnalyzer [135]. Gene abbreviations as described in Figure 1 and other codes as reported in Kazusa 2.5 terminology. Gene codes according to the 3.0 version of the L. japonicus genome are: LjIFS1 (Lj4g3v0485090.1); LjI2’H1 (Lj2g3v1925730.1); LjI2’H2 (Lj4g3v0189840.1); LjHID4 (Lj5g3v2057520.1); LjHI4’OMT (Lj4g3v0484930.1); LjVR1 (Lj6g3v0294050.1); LjSGA_033877.1 (Lj4g3v2079370.1); chr4.LjB15O07.70.r2.m (Lj4g3v1787120.1); chr6.CM1613.30.r2.m (Lj6g3v0029920.1); LjSGA_059924.1 (Lj0g3v0337739.1); chr1.CM0122.1190.r2.m (Lj1g3v4830110.1); chr5.CM0492.240.r2.m (Lj5g3v2298100.1).