Table 1.
Differentially expressed gluten genes and regulating TFs of these genes between Navid and Pishtaz.
| TF ID | TF expression comparisons (fpkm) | Function | Gene ID | Gene expression comparisons (fpkm) |
|---|---|---|---|---|
| Stage one: 5 DPA | ||||
| N.A. | - | HMW-GS | TRIAE_CS42_1BL_TGACv1_030818_AA0101440 | N>P (14.62>0.39) |
| N.A. | - | TRIAE_CS42_1DL_TGACv1_062418_AA0214200 | N>P (11.97>0.56) | |
| N.A. | - | LMW-GS | TRIAE_CS42_1AS_TGACv1_019801_AA0071580 | N>P (11.24> 0.91) |
| NAC (39FF03C5D) | N=P | TRIAE_CS42_1BS_TGACv1_050316_AA0170590 | N>P (35.14>0.39) | |
| ERF (B397F2CE3) | N=P | |||
| GATA (F258582BB) | N>P(23.53>11.69) | |||
| NAC (39FF03C5D) | N=P | TRIAE_CS42_1BS_TGACv1_052225_AA0181540 | N>P (112.75>2.21) | |
| NAC (0924913F8) | N=P | |||
| ERF (B397F2CE3) | N=P | |||
| GATA (F258582BB) | N>P(23.53>11.69) | |||
| NAC (39FF03C5D0 | N=P | TRIAE_CS42_1DS_TGACv1_080114_AA0239910 | N>P (26.35>0.01) | |
| NAC (0924913F8) | N=P | |||
| ERF (B397F2CE3) | N=P | |||
| GATA (F258582BB) | N>P(23.53>11.69) | |||
| N.A. | - | TRIAE_CS42_1DS_TGACv1_080539_AA0249810 | N>P (52.42>1.16) | |
| NAC (39FF03C5D0 | N=P | TRIAE_CS42_1DS_TGACv1_080539_AA0249800 | N>P (23.86>1.26) | |
| NAC (0924913F8) | N=P | |||
| ERF (B397F2CE3) | N=P | |||
| GATA (F258582BB) | N>P(23.53>11.69) | |||
| N.A. | - | Ɣ-gliadin | TRIAE_CS42_1AS_TGACv1_019078_AA0059980 | N>P (31.14>0.66) |
| N.A. | - | TRIAE_CS42_1BS_TGACv1_049356_AA0150030 | N>P (22.67>0.55) | |
| N.A. | - | TRIAE_CS42_1DS_TGACv1_080991_AA0256470 | N>P (25.75>0.57) | |
| N.A. | - | TRIAE_CS42_1DS_TGACv1_080625_AA0251270 | N>P (49.07>0.39) | |
| N.A. | - | TRIAE_CS42_1BS_TGACv1_049356_AA0150110 | N>P (55.08>0.62> | |
| N.A. | - | TRIAE_CS42_1DS_TGACv1_080771_AA0253490 | N>P (50.05>0.76) | |
| N.A. | - | TRIAE_CS42_1DS_TGACv1_080625_AA0251260 | N>P (91.87>0.71) | |
| N.A. | - | TRIAE_CS42_1AS_TGACv1_019696_AA0070095 | N>P (88.25>0.00) | |
| N.A. | - | TRIAE_CS42_3B_TGACv1_220744_AA0717810 | N>P (30.28>0.61) | |
| MYB (12B53AB09) | N<P(9.0<12.4) | TRIAE_CS42_3B_TGACv1_220744_AA0717800 | N>P (10.55>0.15) | |
| MYB (1868E2A6C) | N>P (2.7>1.8) | |||
| MYB (40FA27AE7) | N>P (2.8>0.0) | |||
| MYB (D39684C41) | N=P | |||
| N.A. | - | TRIAE_CS42_3DS_TGACv1_274251_AA0935160 | N>P (42.89>0.70) | |
| N.A. | - | TRIAE_CS42_3DS_TGACv1_273679_AA0932870 | N>P (77.04>0.67) | |
| B3 (TRAES3BF066400010CFD_g) | N>P(7.09>0.17) | TRIAE_CS42_4BL_TGACv1_321643_AA1063570 | N>P (295.47>1.79) | |
| HD-ZIP (9C32B27E2) | N<P(11.35<11.36) | |||
| HD-ZIP (96F9EED93) | N>P(10.39>10.38) | |||
| Dof (2CAAB9D4A) | N<P (3.0<5.9) | |||
| C3H (70AD4B0D5) | N<P (6.29<6.43) | |||
| B3 (TRAES3BF066400010CFD_g) | N>P (7.09>0.17) | TRIAE_CS42_4DL_TGACv1_343623_AA1137420 | N>P (50.84>0.49) | |
| HD-ZIP (9C32B27E2) | N<P(11.35<11.36) | |||
| HD-ZIP (96F9EED930 | N>P(10.39>10.38) | |||
| N.A. | - | TRIAE_CS42_7DS_TGACv1_623321_AA2051980 | N>P (54.36>1.12) | |
| MYB (D39684C41) | N=P | TRIAE_CS42_7AS_TGACv1_569550_AA1818880 | N>P (36.87>0.35) | |
| MYB (D39684C41) | N=P | TRIAE_CS42_7DS_TGACv1_621482_AA2016960 | N>P (31.94>0.45) | |
| GATA (F258582BB) | N>P(23.53>11.69) | α-gliadin | TRIAE_CS42_6AS_TGACv1_485633_AA1549240 | N>P (12.22>0.33) |
| C3H (70AD4B0D5) | N<P (6.29<6.43) | TRIAE_CS42_6BS_TGACv1_516419_AA1675140 | N>P (10.83>0.27) | |
| Stage two: 10 DPA | ||||
| N.A. | - | Ɣ-gliadin | TRIAE_CS42_1AS_TGACv1_019696_AA0070095 | N>P(1605.08>2.60) |
| N.A. | - | TRIAE_CS42_1AS_TGACv1_019696_AA0070097 | N<P (2.00<722.61) | |
| N.A. | - | LMW-GS | TRIAE_CS42_1AS_TGACv1_019801_AA0071580 | N<P (164.63<1317.99) |
| NAC (39FF03C5D) | N=P | TRIAE_CS42_1DS_TGACv1_080114_AA0239910 | N>P (374.69>43.71) | |
| NAC (0924913F8) | N=P | |||
| ERF (B397F2CE3) | N<P (0.48<0.93) | |||
| NAC (39FF03C5D) | N=P | TRIAE_CS42_1DS_TGACv1_080245_AA0244130 | N>P (92.44>10.75) | |
| NAC (0924913F8) | N=P | |||
| ERF (B397F2CE3) | N<P (0.48<0.93) | |||
| Stage three: 14 DPA | ||||
| N.A. | - | Ɣ-gliadin | TRIAE_CS42_1AS_TGACv1_019696_AA0070097 | N<P (5.02<4697.81) |
| Stage four: 21 DAP | ||||
| N.A. | - | Ɣ-gliadin | TRIAE_CS42_1BS_TGACv1_049356_AA0150030 | N>P (8405.70>046) |
| N.A. | - | TRIAE_CS42_1DS_TGACv1_080991_AA0256470 | N>P(4000.7>0.35) | |
| N.A. | - | TRIAE_CS42_1AS_TGACv1_019696_AA0070095 | N>P (8117.06>25.70) | |
| N.A. | - | TRIAE_CS42_1AS_TGACv1_019696_AA0070097 | N<P(4.54<2193.12) | |
| NAC (39FF03C5D) | N=P | LMW-GS | TRIAE_CS42_1BS_TGACv1_052225_AA0181540 | N>P (4072.90>0.19) |
| NAC (0924913F8) | N=P | |||
| ERF (B397F2CE3) | N<P (0.92<3.87) | |||
| NAC (39FF03C5D) | N=P | TRIAE_CS42_1DS_TGACv1_080114_AA0239910 | N>P (4283.01>101.90) | |
| NAC (0924913F8) | N=P | |||
| ERF (B397F2CE3) | N<P (0.92<3.87) | |||
| NAC (39FF03C5D) | N=P | TRIAE_CS42_1DS_TGACv1_080245_AA0244130 | N>P (1671.94>34.44) | |
| NAC (0924913F8) | N=P | |||
| ERF (B397F2CE3) | N<P (0.92<3.87) | |||
| Stage five: 28 DPA | ||||
| N.A. | - | Ɣ-gliadin | TRIAE_CS42_1BS_TGACv1_049356_AA0150030 | N<P(17628.6<20485.6) |
| N.A. | - | TRIAE_CS42_1DS_TGACv1_080991_AA0256470 | N<P(13732.7<15041.8) | |
| N.A. | - | TRIAE_CS42_1AS_TGACv1_019696_AA0070095 | N>P (8318.35>29.79) | |
| N.A. | - | TRIAE_CS42_1AS_TGACv1_019696_AA0070097 | N<P (3.70<4501.26) | |
| NAC (39FF03C5D) | N=P | LMW-GS | TRIAE_CS42_1BS_TGACv1_052225_AA0181540 | N<P (21669.6<24557) |
| NAC (0924913F8) | N=P | |||
| ERF (B397F2CE3) | N<P (0.90<1.54) | |||
| NAC (39FF03C5D) | N=P | TRIAE_CS42_1DS_TGACv1_080114_AA0239910 | N>P(3541.46>89.5951) | |
| NAC (0924913F8) | N=P | |||
| ERF (B397F2CE3) | N<P (0.90<1.54) | |||
| NAC (39FF03C5D) | N=P | TRIAE_CS42_1DS_TGACv1_080245_AA0244130 | N>P (3541.46>89.59) | |
| NAC (0924913F8) | N=P | |||
| ERF (B397F2CE3) | N<P (0.90<1.54) | |||
N: Navid cultivar; P: Pishtaz cultivar; fpkm: Fragments Per Kilobase of transcript per Million mapped reads; N.A. (Not Assigned): It did not experimentally identified TF for related gene.