no. of restraints |
|
|
|
|
all distance restraints, including hydrogen bonds |
191 |
182 |
258 |
173 |
all NOE restraints |
150 |
141 |
221 |
146 |
intraresidue |
69 |
68 |
121 |
75 |
sequential residues |
79 |
62 |
79 |
57 |
long range RNA (excluding 4–, 5–, or 9–RNA) |
2 |
2 |
2 |
2 |
intramolecular 4, 5, or 9
|
N/A |
2 |
6 |
1 |
intermolecular 4–, 5–, or 9–RNA |
N/A |
7 |
13 |
11 |
hydrogen bonds |
41 |
41 |
37 |
27 |
dihedral |
0 |
0 |
0 |
105 |
RMSD of experimental restraints |
|
|
|
|
distance (Å) |
3.8 × 10−3
|
2.8 × 10−3
|
4.2 × 10−3
|
2.1 × 10−3
|
dihedral (deg) |
N/A |
N/A |
N/A |
2.1 × 10−3
|
RMSD of structures for heavy atoms (Å) |
|
|
|
|
all residues, excluding 4, 5, or 9
|
1.79 ± 0.31 |
1.92 ± 0.49 |
1.11 ± 0.25 |
1.37 ± 0.36 |
all residues and 4, 5, or 9
|
N/A |
1.91 ± 0.47 |
1.12 ± 0.25 |
1.41 ± 0.34 |
outer helices (residues 1–3, 9–14, and 19–21) |
2.01 ± 0.40 |
1.92 ± 0.61 |
1.02 ± 0.31 |
1.40 ± 0.47 |
4, 5, or 9
|
N/A |
1.06 ± 0.38 |
0.50 ± 0.33 |
1.08 ± 0.60 |
Bulge loop and inner base pairs, including 4, 5, or 9 for bound structure (residues 4–8 and 15–18) |
0.84 ± 0.19 |
1.53 ± 0.37 |
0.85 ± 0.17 |
1.14 ± 0.34 |
Bulge loop and closing pairs, including 4, 5, or 9 for bound structure (residues 5–7 and 16–17) |
0.63 ± 0.19 |
1.43 ± 0.39 |
0.97 ± 0.22 |
1.23 ± 0.40 |