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. 2020 Jun 29;9:e56223. doi: 10.7554/eLife.56223

Table 4. Primer sequences for genomic PCR or RT-PCR analyses.

Gene or aim Primer name (forward) Forward primer(5'−3') Primer name (reverse) Reverse primer(5'−3') Product size
Genomic PCR MAC1 m11 5L TGACAGAGAGCTTCCTCCTGCCTCTGTA EGFP-F CCTGAAGTTCATCTGCACCA 5.0 kb
 Chr.21-loxP #21CEN < 1 > 2L AAATGCATCACCATTCTCCCAGTTACCC PGKr1 GGAGATGAGGAAGAGGAGAACA 4.5 kb
 Cre-loxP recombination TRANSL1 TGGAGGCCATAAACAAGAAGAC TRANSR1 CCCCTTGACCCAGAAATTCCA 409 bp
 Cre-loxP recombination kj neo CATCGCCTTCTATCGCCTTCTTGACG PGKr1 GGAGATGAGGAAGAGGAGAACA ~600 bp
 D21S265 SHGC-40F GGGTAAGAAGGTGCTTAATGCTC SHGC-40R TGAATATGGGTTCTGGATGTAGTG 178 bp
 APP SHGC-31514F CTGGGCAATAGAGCAAGACC SHGC-31514R ACCCATATTATCTATGGACAATTGA 115 bp
 D21S260 D21S260F AGCTGTTCATGCTTCCATCT D21S260R AGAGCCCAGAATATTGACCC 270 bp
 SOD1 SHGC-6902F ATTCTGTGATCTCACTCTCAGG SHGC-6902R TCGCGACTAACAATCAAAGT 133 bp
 D21S261 SHGC-3610F AACACCTTACCTAAAACAGCA SHGC-3610R TGGACCTTTTGATTTTTCCT 130 bp
 AML1 SHGC-30487F GTAACCTGGTTAACATAGGGTTTC SHGC-30487R GTAGGGGAGGCTAATGGCAT 150 bp
 CBR1 J04056F GATCCTCCTGAATGCCTG J04056R GTAAATGCCCTTTGGACC 245 bp
 SIM2 WI-22186F GGGCCTCATGGTAAGAGTCA WI-22186R GAAAAATGTCGGTGGTATCTCC 250 bp
 HLCS WI-15188F TTCAGTACCTCCCCAGATGC WI-15188R CTTAGTAGTGCAGACCTTTACCCC 125 bp
 TTC3 WI-19945F TGGACAAATATAAGGCATGTTCA WI-19945R GTCACCTTCCTCTGCCTTTG 267 bp
 D21S394 D21S394F GGAGCCGGTTCTTCGAAGG D21S394R CAGCGTCCGGAATTCCTGC 71 bp
 D21S336 D21S336F TCTGGTTCCCAGGATTGTAA D21S336R AGAGTTGCTGTAAGCATCAAAGT 350 bp
 D21S55 D21S55F AGGCTCCTTCACCTCTTGAC D21S55R CATCCTCTTTGCATTAGG 159 bp
 GIRK2 GIRK2F GTTTGTCTTCAGCTCACC GIRK2R CCCAAAATACTACACATCC 266 bp
 ERG M21535F AATGGCGTCAGCCTCTCC M21535R CAGTTTGCCTTACGAGTGGTAGC 254 bp
 ETS2 SHGC-11267F TACCATGCCAATGGTTTATAAGG SHGC-11267R ATGTGACTGGGAACATCTTGC 177 bp
 D21S268 D21S268F CAACAGAGTGAGACAGGCTC D21S268R TTCCAGGAACCACTACACTG 213 bp
 PCP4 WI-14954F GAATTCACTCATCGTAACTTCATTT WI-14954R CCTTGTAGGAAGGTATAGACAATGG 126 bp
 D21S266 D21S266F CACAATGTAGATGTAGCACAGTTAG D21S266R TGAGTCTGAAGAAAGGCAAATGAAG 166 bp
 D21S15 D21S15F GAGGATAAACCGATTCACAGCTAGGAATAC D21S15R GTGCACGTAATTAATGACCATGATATTGCT 218 bp
 MX1 WI-18875F TGGACTGACGACTTGAGTGC WI-18875R CTCATGTGCATCTGAGGGTG 143 bp
 TFF1 SGC35308F CAGGGATCTGCCTGCATC SGC35308R ATCGATCTCTTTTAATTTTTAGGCC 183 bp
 PWP2 SHGC-33273F GATCTTGACCGGGAAAAGGG SHGC-33273R AACAAGTGGCAAAATGCATAC 150 bp
 APECED A009B16F AAAATCCTCCCTTTAAGAGC A009B16R GGGTGTTAGGTACTGGCT 118 bp
 PFKL sts-X15573F AGGGCTTCTGAGGCCAGC sts-X15573R AGGGCACTCTGTCCTCCTGC 239 bp
 UBE2G2 WI-11417F TTCAACAGTCATTAGGTTCCACC WI-11417R GTGAGATCGGGAGAGGGAG 129 bp
RT-PCR APP WI-18826F ACGTTTGTTTCTTCGTGCCT WI-18826R GCCCCGTAAAAGTGCTTACA 136 bp
 SOD1 SHGC-6902F ATTCTGTGATCTCACTCTCAGG SHGC-6902R TCGCGACTAACAATCAAAGT 133 bp
 IFNAR2 U29584F CGAAGTTTCAGTCGGTGAG U29584R GGCATTCAGGTTTTATCCC 181 bp
 TTC3 WI-19945F TGGACAAATATAAGGCATGTTCA WI-19945R GTCACCTTCCTCTGCCTTTG 267 bp
 PCP4 WI-14954F GAATTCACTCATCGTAACTTCATTT WI-14954R CCTTGTAGGAAGGTATAGACAATGG 126 bp
 MX1 WI-18875F TGGACTGACGACTTGAGTGC WI-18875R CTCATGTGCATCTGAGGGTG 143 bp
 TFF3 WI-7267F GGCTGTGATTGCTGCCAG WI-7267R GTGGAGCATGGGACCTTTAT 124 bp
 TFF1 SGC35308F CAGGGATCTGCCTGCATC SGC35308R ATCGATCTCTTTTAATTTTTAGGCC 183 bp
 GADPH RPC1 CCATCTTCCAGGAGCGAGA RPC2 TGTCATACCAGGAAATGAGC 722 bp