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. 2020 Jul 7;11:813. doi: 10.3389/fpls.2020.00813

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Copyright © 2020 Haas, Fernandez-Pozo, Meyberg, Perroud, Göttig, Stingl, Saint-Marcoux, Langdale and Rensing.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Circularized SplitsTree network based on an artificial FASTA SNP alignment file. The Neighbor-Joining tree of five P. patens accessions is shown. All libraries cluster within their accession and applied treatment, except for the marked libraries: (A) Sample Re_REUTE-2012_CI_3 has 100 x lower read coverage than the other Re samples. It clusters next to the low read coverage Vx samples. (B) Sample Gd_WT-Grenoble_CIV_1 is a Gd outgroup. (C) Ka sample which was falsely annotated as Gd at the NCBI SRA (XVIII_1_PE_WTY), determined by exclusive SNP analysis (Supplementary File 3, Sheet Ka_exclusive_SNPs).