Skip to main content
. 2020 Jun 2;9:e56159. doi: 10.7554/eLife.56159

Figure 6. A schematic figure detailing the different rates in our phenomenological kinetic model simulated using the Gillespie algorithm.

Figure 6.

The particles on the lattice can diffuse freely (when there are no neighboring particles) with a rate kdiff. In the presence of a neighboring particle, a non-specifically interacting monomer can diffuse away with a rate kdiffϵns.exp(- ϵns). Neighboring particles can also form specific interactions (with fixed valency λ) at a rate kbond or break an existing interaction with a rate kbreak. Clusters could diffuse at a rate that is scaled by their sizes Sclus. ϵns and ϵsp refer to the strength of non-specific and specific interactions, respectively.