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. 2020 Jun 2;9:e56159. doi: 10.7554/eLife.56159

Figure 8. Effect of model parameters on the exchange times between monomers and the aggregates.

The parameter values used in panels A and B are ϕlattice=0.04, kbond/kdiff = 1. (A) Mean first passage time for the monomers to go from the buried state (with four neighbors) to the free state (with no neighbors) in response to varying values of specific interaction strength. The two curves show the trends for species with different interaction valencies. The dashed solid lines refer to value of ϵsp beyond which the largest cluster consumes 50% or more of available monomers. (B) The state of the system, for variation in ϵsp and λ suggests that the system displays remarkable malleability in dynamicity and size distributions. Weak ϵsp and a low λ results in no phase separation (shaded black). For higher values of both these parameters, the system can access the single large macro-phasic state (shaded yellow), however with a dramatic slowdown in exchange times. For an intermediate range, the system adopts a metastable microphase separated state, with either slow (shaded red) or fast-exchange (shaded blue) dynamics. (C) The experimentally determined molecular exchange times for molecules of varying interaction valencies. (Xing et al., 2018). (D) The extent of recovery after a photobeaching experiment, for interacting species with varying valencies. The data in panel C) and D) has been obtained from a study by Xing et al., 2018. The solid curves in C and D are added to guide the eye.

Figure 8—source data 1. Compressed zip file containing the source data for kinetic phase diagrams in Figure 8.

Figure 8.

Figure 8—figure supplement 1. <Lclus> for varying values of ϵsp and λ, for a ϕlattice of 0.04, and a kbond/kdiff ratio of 1.

Figure 8—figure supplement 1.

(B) Mean first passage times for a particle to exchange between a cluster and the bulk. The parameter values are same as in panel A.