REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Hamsters anti-CD3e (clone 500A2) | BD Biosciences | Cat#: 560771; RRID:AB_1937314 |
Rat anti-CD4 (clone RM4-5) | Biolegend | Cat#: 100528; RRID:AB_312729 |
Mouse anti-CD90.1 (clone OX-7) | Biolegend | Cat#: 202506 RRID:AB_492882 |
Rat anti-CD90.2 (clone 30-H12) | Biolegend | Cat#: 105308; RRID:AB_313179 |
Rat anti-IL-17A (clone TC11-18H10.1) | Biolegend | Cat#: 506926; RRID:AB_2632611 |
Mouse anti-IL-17F (clone 9D3.1C8) | Biolegend | Cat#: 517006; RRID:AB_10661903 |
Rat anti-GM-CSF (clone MP1-22E9) | Biolegend | Cat#: 505406; RRID:AB_315382 |
Anti-IL-22 (clone 3F11.3) | Genentech | N/A |
Goat anti-IL-24 (polyclonal) | R&D systems | Cat#: AF2786; RRID:AB_2124803 |
Rat anti-IL-17RA/IL-17R (clone 657603) | R&D systems | Cat#: FAB4482G; RRID:AB_10891099 |
Goat anti-IL-17RC (polyclonal) | R&D systems | Cat#: FAB2270A; RRID:AB_2125672 |
Rat anti-IFN-γ (clone XMG1.2) | eBioscience | Cat#: 25-7311-82; RRID:AB_469680 |
Mouse anti-CD3 (clone SK7) | BD Biosciences | Cat#: 563219; RRID:AB_2738076 |
Mouse anti-CD4 (clone RPA-T4) | BD Biosciences | Cat#: 562424; RRID:AB_11154417 |
Mouse anti-IL-17A (clone BL168) | Biolegend | Cat#: 512304; RRID:AB_961390 |
Mouse anti-IL-17F (clone 033-782) | BD Biosciences | Cat#: 561197; RRID:AB_10611873 |
Rat anti-GM-CSF (clone BVD2-21C11) | BD Biosciences | Cat#: 562257; RRID:AB_11152076 |
Rabbit anti-phospho-NF-κB p65 (clone 93H1) | Cell Signaling Technology | Cat#: 4887; RRID:AB_561198 |
Rabbit anti-phospho-Erk1/2 (clone 197G2) | Cell Signaling Technology | Cat#: 14095; RRID:AB_2728834 |
Mouse anti-phospho-p38 MAPK (clone 28B10) | Cell Signaling Technology | Cat#: 4551; RRID:AB_331302 |
Mouse anti-NF-κB p65 (clone F-6) | Santa Cruz Biotechnology | Cat#: sc-8008; RRID:AB_628017 |
Rat anti-CD4 (clone RM4-4) | eBioscience | Cat#: 11-0043-82; RRID:AB_464900 |
Rabbit anti-Histone H3 (polyclonal) | EMD Millipore Corporation | Cat#: 06-755; RRID:AB_2118461 |
Rabbit anti-GAPDH (clone 14C10) | Cell Signaling Technology | Cat#: 2118S; RRID:AB_561053 |
Mouse anti-IL-17A (clone 17F3) | BioXcell | Cat#: BE0173; RRID:AB_10950102 |
Mouse anti-IgG1 (clone MOPC1-21) | BioXcell | Cat#: BE0083; RRID:AB_1107784 |
Rat anti-IL-4 (clone 30340) | R&D systems | Cat#: MAB404; RRID:AB_2128960 |
Hamster anti-IFN-γ (clone H22) | R&D systems | Cat#: MAB4851; RRID:AB_2123046 |
Mouse anti-IL-4 (clone 34019) | R&D systems | Cat#: MAB204; RRID:AB_2126745 |
Mouse anti-IFN-g (clone K3.53) | R&D systems | Cat#: MAB2852; RRID:AB_2123304 |
Bacterial and Virus Strains | ||
M. tuberculosis H37 Ra | BD | 231141 |
Chemicals, Peptides, and Recombinant Proteins | ||
Complete Freund’s Adjuvant | Sigma | F5881 |
Bordetella pertussis toxin | Sigma | P7208-50UG |
Recombinant mouse TGF-beta 1 | R&D systems | Cat#: 7666-MB |
Recombinant mouse IL-6 | R&D systems | Cat#: 406-ML |
Recombinant mouse IL-24 | R&D systems | Cat#: 7807-ML |
Recombinant mouse IL-23 | R&D systems | Cat#: 1887-ML |
Recombinant human TGF-beta 1 | R&D systems | Cat#: 240-B |
Recombinant human IL-1beta | R&D systems | Cat#: 201-LB |
Recombinant human IL-6 | R&D systems | Cat#: 206-1L |
Recombinant human IL-24 | R&D systems | Cat#: 1965-1L |
Recombinant human IL-23 | R&D systems | Cat#: 1290-1L |
Recombinant human TGF-beta 1 | Peprotech | Cat#: 100-21 |
Recombinant human IL-1beta | Peprotech | Cat#: 200-01B |
Recombinant human IL-6 | Peprotech | Cat#: 200-06 |
Recombinant human IL-23 | Peprotech | Cat#: 200-23 |
MOG35-55 | Bio Basic, Inc | Custom synthesis |
IRBP161-180 | Bio Basic, Inc | Custom synthesis |
IRBP1-20 | Bio Basic, Inc | Custom synthesis |
Critical Commercial Assays | ||
TruSeq RNA Sample Prep Kit | Illumina | FC-122-1001 |
Deposited Data | ||
Raw and analyzed data | This paper | GEO: GSE152534 |
Experimental Models: Organisms/Strains | ||
Mouse: R161H. B10.RIII | Horai et al., 2013 | N/A |
Mouse: Il17A−/−, B6 | Nakae et al., 2002 | N/A |
Mouse: Il17F−/−, B6 | Ishigame et al., 2009 | N/A |
Mouse: Il24−/−, B6 | Chan et al., 2006 | N/A |
Oligonucleotides | ||
Primer for IL-24 promoter Fwd 5′TAGCTAGCTAGCTTTAGCTTCTGGGCT 3′ | This paper | N/A |
Primer for IL-24 promoter Rev 5′ ATAAGCTTTCAAGGCAGCAGCCTAACA 3′ |
This paper | N/A |
Accell siRNA for IL-24 | Dharmacon | N/A |
Accell siRNA for Socs1 | Dharmacon | N/A |
Accell siRNA for Socs3 | Dharmacon | N/A |
Software and Algorithms | ||
Bowtie2 v2.1.0 | Langmead et al., 2009 | https://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.1.0/ |
TopHat2 v2.0.9 | Trapnell et al., 2009 | https://ccb.jhu.edu/software/tophat/index.shtml |
Integrative Genomics Viewer | Robinson et al., 2011 | http://software.broadinstitute.org/software/igv/ |
SAMtools v0.1.19 | Robinson et al., 2011 | https://sourceforge.net/projects/samtools/files/samtools/0.1.19/ |
FastQC v0.10.1 | Andrews S: FastQC: A quality control tool for high throughput sequence data | https://www.bioinformatics.babraham.ac.uk/projects/fastqc/ |
eXpress v1.3.1 | Roberts et.al., 2013 | https://pachterlab.github.io/eXpress/ |
EdgeR | Robinson et al., 2010 | http://bioconductor.org/packages/release/bioc/html/edgeR.html |
Genome Analyzer IIx (SCS v2.10 software) | Illumina | https://www.illumina.com/content/dam/illumina-marketing/documents/products/specifications/specification_genome_analyzer.pdf |
Flowjo v10 | FlowJo | N/A |
Prism 7 | Graphpad | N/A |
Genomatix software | GGA suite | N/A |