Skip to main content
. 2020 Jul 15;53(2):384–397.e5. doi: 10.1016/j.immuni.2020.06.022
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Hamsters anti-CD3e (clone 500A2) BD Biosciences Cat#: 560771; RRID:AB_1937314
Rat anti-CD4 (clone RM4-5) Biolegend Cat#: 100528; RRID:AB_312729
Mouse anti-CD90.1 (clone OX-7) Biolegend Cat#: 202506 RRID:AB_492882
Rat anti-CD90.2 (clone 30-H12) Biolegend Cat#: 105308; RRID:AB_313179
Rat anti-IL-17A (clone TC11-18H10.1) Biolegend Cat#: 506926; RRID:AB_2632611
Mouse anti-IL-17F (clone 9D3.1C8) Biolegend Cat#: 517006; RRID:AB_10661903
Rat anti-GM-CSF (clone MP1-22E9) Biolegend Cat#: 505406; RRID:AB_315382
Anti-IL-22 (clone 3F11.3) Genentech N/A
Goat anti-IL-24 (polyclonal) R&D systems Cat#: AF2786; RRID:AB_2124803
Rat anti-IL-17RA/IL-17R (clone 657603) R&D systems Cat#: FAB4482G; RRID:AB_10891099
Goat anti-IL-17RC (polyclonal) R&D systems Cat#: FAB2270A; RRID:AB_2125672
Rat anti-IFN-γ (clone XMG1.2) eBioscience Cat#: 25-7311-82; RRID:AB_469680
Mouse anti-CD3 (clone SK7) BD Biosciences Cat#: 563219; RRID:AB_2738076
Mouse anti-CD4 (clone RPA-T4) BD Biosciences Cat#: 562424; RRID:AB_11154417
Mouse anti-IL-17A (clone BL168) Biolegend Cat#: 512304; RRID:AB_961390
Mouse anti-IL-17F (clone 033-782) BD Biosciences Cat#: 561197; RRID:AB_10611873
Rat anti-GM-CSF (clone BVD2-21C11) BD Biosciences Cat#: 562257; RRID:AB_11152076
Rabbit anti-phospho-NF-κB p65 (clone 93H1) Cell Signaling Technology Cat#: 4887; RRID:AB_561198
Rabbit anti-phospho-Erk1/2 (clone 197G2) Cell Signaling Technology Cat#: 14095; RRID:AB_2728834
Mouse anti-phospho-p38 MAPK (clone 28B10) Cell Signaling Technology Cat#: 4551; RRID:AB_331302
Mouse anti-NF-κB p65 (clone F-6) Santa Cruz Biotechnology Cat#: sc-8008; RRID:AB_628017
Rat anti-CD4 (clone RM4-4) eBioscience Cat#: 11-0043-82; RRID:AB_464900
Rabbit anti-Histone H3 (polyclonal) EMD Millipore Corporation Cat#: 06-755; RRID:AB_2118461
Rabbit anti-GAPDH (clone 14C10) Cell Signaling Technology Cat#: 2118S; RRID:AB_561053
Mouse anti-IL-17A (clone 17F3) BioXcell Cat#: BE0173; RRID:AB_10950102
Mouse anti-IgG1 (clone MOPC1-21) BioXcell Cat#: BE0083; RRID:AB_1107784
Rat anti-IL-4 (clone 30340) R&D systems Cat#: MAB404; RRID:AB_2128960
Hamster anti-IFN-γ (clone H22) R&D systems Cat#: MAB4851; RRID:AB_2123046
Mouse anti-IL-4 (clone 34019) R&D systems Cat#: MAB204; RRID:AB_2126745
Mouse anti-IFN-g (clone K3.53) R&D systems Cat#: MAB2852; RRID:AB_2123304

Bacterial and Virus Strains

M. tuberculosis H37 Ra BD 231141

Chemicals, Peptides, and Recombinant Proteins

Complete Freund’s Adjuvant Sigma F5881
Bordetella pertussis toxin Sigma P7208-50UG
Recombinant mouse TGF-beta 1 R&D systems Cat#: 7666-MB
Recombinant mouse IL-6 R&D systems Cat#: 406-ML
Recombinant mouse IL-24 R&D systems Cat#: 7807-ML
Recombinant mouse IL-23 R&D systems Cat#: 1887-ML
Recombinant human TGF-beta 1 R&D systems Cat#: 240-B
Recombinant human IL-1beta R&D systems Cat#: 201-LB
Recombinant human IL-6 R&D systems Cat#: 206-1L
Recombinant human IL-24 R&D systems Cat#: 1965-1L
Recombinant human IL-23 R&D systems Cat#: 1290-1L
Recombinant human TGF-beta 1 Peprotech Cat#: 100-21
Recombinant human IL-1beta Peprotech Cat#: 200-01B
Recombinant human IL-6 Peprotech Cat#: 200-06
Recombinant human IL-23 Peprotech Cat#: 200-23
MOG35-55 Bio Basic, Inc Custom synthesis
IRBP161-180 Bio Basic, Inc Custom synthesis
IRBP1-20 Bio Basic, Inc Custom synthesis

Critical Commercial Assays

TruSeq RNA Sample Prep Kit Illumina FC-122-1001

Deposited Data

Raw and analyzed data This paper GEO: GSE152534

Experimental Models: Organisms/Strains

Mouse: R161H. B10.RIII Horai et al., 2013 N/A
Mouse: Il17A−/−, B6 Nakae et al., 2002 N/A
Mouse: Il17F−/−, B6 Ishigame et al., 2009 N/A
Mouse: Il24−/−, B6 Chan et al., 2006 N/A

Oligonucleotides

Primer for IL-24 promoter Fwd 5′TAGCTAGCTAGCTTTAGCTTCTGGGCT 3′ This paper N/A
Primer for IL-24 promoter Rev
5′ ATAAGCTTTCAAGGCAGCAGCCTAACA 3′
This paper N/A
Accell siRNA for IL-24 Dharmacon N/A
Accell siRNA for Socs1 Dharmacon N/A
Accell siRNA for Socs3 Dharmacon N/A

Software and Algorithms

Bowtie2 v2.1.0 Langmead et al., 2009 https://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.1.0/
TopHat2 v2.0.9 Trapnell et al., 2009 https://ccb.jhu.edu/software/tophat/index.shtml
Integrative Genomics Viewer Robinson et al., 2011 http://software.broadinstitute.org/software/igv/
SAMtools v0.1.19 Robinson et al., 2011 https://sourceforge.net/projects/samtools/files/samtools/0.1.19/
FastQC v0.10.1 Andrews S: FastQC: A quality control tool for high throughput sequence data https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
eXpress v1.3.1 Roberts et.al., 2013 https://pachterlab.github.io/eXpress/
EdgeR Robinson et al., 2010 http://bioconductor.org/packages/release/bioc/html/edgeR.html
Genome Analyzer IIx (SCS v2.10 software) Illumina https://www.illumina.com/content/dam/illumina-marketing/documents/products/specifications/specification_genome_analyzer.pdf
Flowjo v10 FlowJo N/A
Prism 7 Graphpad N/A
Genomatix software GGA suite N/A