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. 2020 May 14;295(28):9474–9489. doi: 10.1074/jbc.RA120.013028

Table 2.

Crystallographic statistics. The values in parentheses refer to the high-resolution shell

Enzyme
pET53-His-ASRΔ2-Strep
Ligand Isomaltose Isomaltotriose Panose Oligoalternan Isomaltononaose
PDB code 6SZI 6SYQ 6T16 6T18 6T1P
    Soaking concentration 100 mm 100 mm 100 mm 100 g/liter 100 mm
    Soaking duration 1 min 5 min 5 min 5 min 5 min
Data collection
    Wavelength (Å) 0.9734 0.9793 0.9979 0.9793 0.9979
    Space group P212121 P212121 P212121 P212121 P212121
    Molecules/asymmetric unit 2 2 2 2 2
    Cell constants (Å)
        a 100.74 100.72 101.00 100.87 100.57
        b 134.69 135.65 134.30 135.65 135.21
        c 236.04 238.94 235.37 239.42 237.20
    Resolution (Å) 50.00–3.00 50.00–3.00 50.00–3.10 50.00–3.15 50.00–3.50
    Measured reflections 440,819 352,514 275,779 255,328 187,213
    Unique reflections 65,077 61,391 58,714 57,606 39,240
    Data completeness (%) 99.9 92.4 99.7 99.9 94.9
    Rmerge 0.11 (0.77) 0.07 (0.77) 0.10 (0.78) 0.09 (0.72) 0.14 (0.76)a
    I/σ(I) 6.1 (1.0) 8.5 (1.0) 6.7 (1.0) 7.5 (1.1) 4.9 (1.0)
    CC1/2 0.99 (0.85) 0.99 (0.82) 0.99 (0.80) 0.99 (0.71) 0.99 (0.71)
    Wilson B-factor (Ų) 74.2 73.7 83.0 78.5 99.4a
Refinement
    Rwork/Rfree 0.207/0.237 0.201/0.237 0.223/0.253 0.200/0.226 0.206/0.266a
    RMSD
        Bonds (Å) 0.010 0.010 0.010 0.008 0.009
        Angles (°) 1.332 1.308 1.282 1.222 1.250
    Ramachandran statistics (%)
        Favored 96 96 96 96 96
        Allowed          4 4 4 4 4
        Outliers 0 0 0 0 0
    Number of atoms
        Protein 19,318 19,242 19,251 19,221 19,271
        Calcium 2 2 2 2 2
        Carbohydrates 69 103 136 146 78
    Average B-factor (Ų) 82.0 73.7 105.6 90.0 108.2a
    CCall/CCfree 0.94/0.92 0.95/0.93 0.94/0.92 0.94/0.92 0.94/0.89
    Clashscore (percentile) 3 (100th) 3 (100th) 4 (100th) 3 (100th) 3 (100th)

a Soakings, in particular those with longer ligands, affected diffraction quality and refinement statistics.