Table 2.
Crystallographic statistics. The values in parentheses refer to the high-resolution shell
Enzyme |
pET53-His-ASRΔ2-Strep |
||||
---|---|---|---|---|---|
Ligand | Isomaltose | Isomaltotriose | Panose | Oligoalternan | Isomaltononaose |
PDB code | 6SZI | 6SYQ | 6T16 | 6T18 | 6T1P |
Soaking concentration | 100 mm | 100 mm | 100 mm | 100 g/liter | 100 mm |
Soaking duration | 1 min | 5 min | 5 min | 5 min | 5 min |
Data collection | |||||
Wavelength (Å) | 0.9734 | 0.9793 | 0.9979 | 0.9793 | 0.9979 |
Space group | P212121 | P212121 | P212121 | P212121 | P212121 |
Molecules/asymmetric unit | 2 | 2 | 2 | 2 | 2 |
Cell constants (Å) | |||||
a | 100.74 | 100.72 | 101.00 | 100.87 | 100.57 |
b | 134.69 | 135.65 | 134.30 | 135.65 | 135.21 |
c | 236.04 | 238.94 | 235.37 | 239.42 | 237.20 |
Resolution (Å) | 50.00–3.00 | 50.00–3.00 | 50.00–3.10 | 50.00–3.15 | 50.00–3.50 |
Measured reflections | 440,819 | 352,514 | 275,779 | 255,328 | 187,213 |
Unique reflections | 65,077 | 61,391 | 58,714 | 57,606 | 39,240 |
Data completeness (%) | 99.9 | 92.4 | 99.7 | 99.9 | 94.9 |
Rmerge | 0.11 (0.77) | 0.07 (0.77) | 0.10 (0.78) | 0.09 (0.72) | 0.14 (0.76)a |
I/σ(I) | 6.1 (1.0) | 8.5 (1.0) | 6.7 (1.0) | 7.5 (1.1) | 4.9 (1.0) |
CC1/2 | 0.99 (0.85) | 0.99 (0.82) | 0.99 (0.80) | 0.99 (0.71) | 0.99 (0.71) |
Wilson B-factor (Ų) | 74.2 | 73.7 | 83.0 | 78.5 | 99.4a |
Refinement | |||||
Rwork/Rfree | 0.207/0.237 | 0.201/0.237 | 0.223/0.253 | 0.200/0.226 | 0.206/0.266a |
RMSD | |||||
Bonds (Å) | 0.010 | 0.010 | 0.010 | 0.008 | 0.009 |
Angles (°) | 1.332 | 1.308 | 1.282 | 1.222 | 1.250 |
Ramachandran statistics (%) | |||||
Favored | 96 | 96 | 96 | 96 | 96 |
Allowed | 4 | 4 | 4 | 4 | 4 |
Outliers | 0 | 0 | 0 | 0 | 0 |
Number of atoms | |||||
Protein | 19,318 | 19,242 | 19,251 | 19,221 | 19,271 |
Calcium | 2 | 2 | 2 | 2 | 2 |
Carbohydrates | 69 | 103 | 136 | 146 | 78 |
Average B-factor (Ų) | 82.0 | 73.7 | 105.6 | 90.0 | 108.2a |
CCall/CCfree | 0.94/0.92 | 0.95/0.93 | 0.94/0.92 | 0.94/0.92 | 0.94/0.89 |
Clashscore (percentile) | 3 (100th) | 3 (100th) | 4 (100th) | 3 (100th) | 3 (100th) |
a Soakings, in particular those with longer ligands, affected diffraction quality and refinement statistics.