Table 1.

Breakdown of Neandertal DNA Coverage in the HipSci Resource

	Average across Cell Lines (Range)	Cumulative across Cell Lines (Range)
Neandertal ancestry (bps)	22,985,635 (18,725,364–30,931,585)	607,404,493
Haplotype length (bps)	48,014 (42,613–56,968)	–
Neandertal alleles	15,845 (12,829–20,060)	205,032
Missense Neandertal alleles	59 (38–90)	719
Neandertal alleles in enhancer/promoter regions	235 (169–340)	2,852
Neandertal PheWAS alleles	45 (29–60)	924
Neandertal GTEx eQTLs	45 (29–60)	270
Neandertal alleles showing allele-specific expression	119 (75–176)	957