Table 2.
Prevalence of Phenotype-Associated Neandertal Alleles in the HipSci Resource
| Publication | Phenotype | Neandertal Allele Frequency in HipSci Resource (%) | tag SNP |
|---|---|---|---|
| Sankararaman et al., 2014 | smoking behavior | 11.3 | chr9:136478355 |
| Crohn disease | 26.6 | chr10:64415184 | |
| optic disc size | 4.9 | chr10:70019371 | |
| Crohn disease | 1.2 | chr12:40601940 | |
| Dannemann et al., 2016 | allergy susceptibility H. pylori status |
17.9 | chr4:38760338 |
| Simonti et al., 2016 | hypercoagulable state | 0.6 | chr1:169593113 |
| protein-calorie malnutrition | 5.5 | chr1:234099819 | |
| tobacco use disorder | 0.3 | chr3:10962315 | |
| symptoms involving urinary system | 10.7 | chr11:3867350 | |
| Quach et al., 2016 | pathogen response | 16.2 | chr14:74152316 |
| Sams et al., 2016 | pathogen response | 32.9 | chr12:113366899 |
| Dannemann and Kelso, 2017 | chronotype | 11.3 | chr2:239316043 |
| hair color | 0 | chr6:503851 | |
| skin color | 9 | chr6:45553288 | |
| pulse rate | 1.7 | chr6:121947984 | |
| skin tanning | 65.6 | chr9:16720122 | |
| skin color | 7.2 | chr9:16904635 | |
| sitting height | 4.9 | chr10:70019371 | |
| narcolepsy | 0.6 | chr10:94574048 | |
| skin color | 2.9 | chr11:89996325 | |
| hair color | 5.2 | chr14:92793206 | |
| impedance of leg | 22.3 | chr15:85114447 | |
| hair color | 0 | chr16:89947203 | |
| height at age 10 | 20.2 | chr19:31033240 |