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. 2020 Jul 9;11:1557. doi: 10.3389/fmicb.2020.01557

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Copyright © 2020 Breitenwieser, Doll, Clavel, Scherer and Wenning.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Comparison of microbiota in samples 3 (farm A) and 4 (farm B) as detected by the cultivation (3-I, 4-I) and molecular (3-A, 4-A) approaches. (A) Relative abundance of families. Only families >1% in at least one analysis are listed. i.s., incertae sedis; n.d., not detected. (B) Relative abundance of phyla. C., Candidatus. (C) Phylogram based on the Ward’s minimum variance method showing the hierarchical clustering of samples. Genus-level data were used to calculate distances; only the 57 genera detected at least once by both the cultivation-dependent and –independent analyses were included.