Table 3.
Csr homologs in bacterial phages.
| Phage | Host bacteria | Score | Query cover | E value | Identity | Genbank accession | References |
|---|---|---|---|---|---|---|---|
| AUS531phi | Pseudomonas aeruginosa | 80.1 | 90% | 1,00E-19 | 63% | QGF21359.1 | |
| YMC11/07/P54_PAE_BP | Pseudomonas aeruginosa | 80.1 | 90% | 1,00E-19 | 63% | YP_009273743.1 | |
| vB_Pae_BR153a] | Pseudomonas aeruginosa | 79.7 | 90% | 2,00E-19 | 62% | QBI80752.1 | Tariq et al., 2019 |
| phi297 | Pseudomonas aeruginosa | 79.0 | 90% | 3,00E-19 | 62% | YP_005098048.1 | Krylov et al., 2013 |
| vB_Pae_CF24a | Pseudomonas aeruginosa | 74.0 | 95% | 3,00E-17 | 57% | QBI82405.1 | Tariq et al., 2019 |
| H66 | Pseudomonas aeruginosa | 73.6 | 95% | 4,00E-17 | 55% | YP_009638943.1 | |
| F116 | Pseudomonas aeruginosa | 72.8 | 95% | 8,00E-17 | 55% | YP_164288.1 | Byrne and Kropinski, 2005 |
| vB_Pae_CF63a | Pseudomonas aeruginosa | 72.4 | 95% | 1,00E-16 | 55% | QBI82448.1 | Tariq et al., 2019 |
| 1.232.O._10N.261.51.E11 | Vibrio tasmaniensis | 68.2 | 93% | 1,00E-15 | 59% | AUR96800.1 | |
| Prokaryotic dsDNA virus sp. | Marine metagenome | 67.8 | 98% | 2,00E-15 | 53% | QDP60892.1 | Roux et al., 2016 |
| Caudovirales phage | Male skin metagenome | 64.3 | 88% | 5,00E-14 | 50% | ASN71505.1 | |
| Prokaryotic dsDNA virus sp. | Marine metagenome | 63.2 | 93% | 1,00E-13 | 42% | QDP52503.1 | |
| Marine virus | Marine metagenome | 63.6 | 96% | 9,00E-13 | 30% | AKH48332.1 | Chow et al., 2015 |
| GP4 | Ralstonia solanacearum | 61.2 | 96% | 9,00E-13 | 25% | AXG67699.1 | Wang et al., 2019 |
| DC1 | Burkholderia cepacia LMG 18821 | 60.9 | 98% | 1,00E-12 | 28% | YP_006589976.1 | Lynch et al., 2012 |
| VvAW1 | Vibrio vulnificus | 60.5 | 98% | 2,00E-12 | 52% | YP_007518368.1 | Nigro et al., 2012 |
| Bcep22 | Burkholderia cenocepacia | 58.9 | 96% | 6,00E-12 | 30% | NP_944283.1 | Gill et al., 2011 |
| Parlo | Serratia sp. | 57.4 | 98% | 3,00E-11 | 31% | QBQ72211.1 | Bockoven et al., 2019 |
| Bcepil02 | Burkholderia cenocepacia | 57.0 | 96% | 4,00E-11 | 32% | YP_002922721.1 | Gill et al., 2011 |
| Bcepmigl | Burkholderia cenocepacia | 56.6 | 96% | 5,00E-11 | 32% | YP_007236796.1 | |
| PEp14 | Erwinia pyrifoliae | 56.6 | 95% | 6,00E-11 | 27% | YP_005098413.1 | |
| SopranoGao_25 | Klebsiella pneumoniae 51503 | 56.2 | 93% | 9,00E-11 | 26% | ASV45048.1 | Gao et al., 2017 |
| Prokaryotic dsDNA virus sp. | Marine metagenome | 55.1 | 96% | 2,00E-10 | 40% | QDP56147.1 | Roux et al., 2016 |
| Pavtok | Erwinia amylovora | 54.7 | 90% | 3,00E-10 | 29% | AXF51437.1 | |
| Skulduggery | Pseudomonas fluorescens SBW25 | 53.9 | 85% | 6,00E-10 | 32% | ARV77111.1 | Wojtus et al., 2017 |
| Prokaryotic dsDNA virus sp. | Marine metagenome | 53.5 | 90% | 9,00E-10 | 28% | QDP46120.1 | Roux et al., 2016 |
| VH2_2019 | Vibrio natriegens | 55.1 | 81% | 1,00E-09 | 41% | QHJ74590.1 | |
| vB_EcoP_PTXU04 | Escherichia coli | 53.2 | 72% | 1,00E-09 | 36% | QBQ76642.1 | Korf et al., 2019 |
| uvMED | Mediterranean Sea metagenome | 47.4 | 83% | 2,00E-07 | 29% | BAR35878.1 | Mizuno et al., 2013 |
| Prokaryotic dsDNA virus sp. | Marine metagenome | 41.6 | 72% | 3,00E-05 | 36% | QDP60323.1 | Roux et al., 2016 |
CsrA homologs were identified with the NCBI PSI-BLAST tool using the E. coli CsrA sequence as query and narrowing the database search to the Viruses taxid:10239 (database accessed on April 2, 2020). A total of 10 iterations was needed until no further hits were added to the results list.