Table 1.
Groups of orthologous introns of different classes. Introns with nothing in the gene column came from transcripts with no gene name annotated by Ensembl. Vertical bars in the sequence column denote splice sites, and the middle sequence flanked by ellipses is the putative branch point region as annotated by intronIC
| Organism | Gene | Intron Class | Phase | Sequence |
|---|---|---|---|---|
| Zea mays | U12-type | 0 | GCAAAG|GTATCCTTTT…TCCTCCTAAACT…TGCAG|TCCTCC | |
| Oryza sativa | U2-type | 0 | GCCAAG|GTAATTTATA…TTAATGTTTAAT…TGCAG|TTAATG | |
| Zea mays | U2-type | 0 | AAGCGG|GTATGTCTAG…TTGATCTCACCT…ATCAG|TTGATC | |
| Glycine max | U12-type | 0 | AAGCGT|GTATCCTTCA…TTGTCCTTGACC…GAAAG|TTGTCC | |
| Zea mays | U2-type | 1 | TCAACA|GTACGCAACA…TCCTTCTTAATT…TGTAG|TCCTTC | |
| Oryza sativa | U12-type | 1 | TCAACA|GTATCCATCA…TTTTTCTTAACT…TGTAG|TTTTTC | |
| Arabidopsis thaliana | U2-type | 1 | TCAACA|GTAAATTTTC…TTTCTCTTGACC…TGCAG|TTTCTC | |
| Canis familiaris | SMYD2 | U12-type | 1 | ACAAAT|ATATCCTTTA…CTTTCCTTGACA…AGCAC|CTTTCC |
| Homo sapiens | SMYD2 | U12-type | 1 | ATAAAT|ATATCCTTTA…CTTTCCTTGACT…AGCAC|CTTTCC |
| Mus musculus | Smyd2 | U12-type | 1 | ACAAAT|ATAACCTTTC…GTTTCCTTGACG…AGCAC|GTTTCC |
| Macaca mulatta | SMYD2 | U2-type | 1 | ACAACT|GCCCTGATGG…GTTTCCTTGACT…CACAG|GTTTCC |
| Pan troglodytes | SMYD2 | U12-type | 1 | ATAAAT|ATATCCTTTA…GTTTCCTTGACT…AGCAC|GTTTCC |
| Rattus norvegicus | Smyd2 | U12-type | 1 | ACAAAT|ATAACCTTTC…GTTTCCTTGACG…AGCAC|GTTTCC |
| Anopheles gambiae | U2-type | 2 | TAATCC|GTATGTAACC…TGTTTCTCCTTT…TGTAG|TGTTTC | |
| Monodelphis domestica | RNF121 | U12-type | 2 | TAACCC|GTATCCTTTT…TTTTCTTTAACC…TGAAG|TTTTCT |
| Rattus norvegicus | Rnf121 | U12-type | 2 | CAATCC|GTATCCTTTG…TGATCCTTAACA…GACAG|TGATCC |
| Homo sapiens | UFD1 | U12-type | 2 | AGCCGT|GTATCTTTTT…GTTGCCTTGACA…TGCAG|GTTGCC |
| Pan troglodytes | UFD1 | U12-type | 2 | AGCCGT|GTATCTTTTT…GTTGCCTTGACA…TGCAG|GTTGCC |
| Tetraodon nigroviridis | ufd1l | U2-type | 2 | AGCAGT|GTAAGAACGA…GAATTGTTTTCT…TGCAG|GAATTG |