Table 2.
Data collection and refinement statistics
Data collection | |
Detector type/source | Rayonix CCD/APS LS-CAT |
Wavelength (Å) | 0.97872 |
Space group | P6522 |
Cell parameters | a = b = 118.28 Å, c = 261.55 Å |
Number of data sets | 5 |
Resolution range (Å)a | 39.18–3.28 (3.46–3.28) |
Total number of observations | 720 160 (41 046) |
Unique reflections | 15 332 (760) |
Mean (I)/σ(I) | 18.2 (1.8) |
Completeness (spherical) (%)b | 88.3 (30.7) |
Completeness (ellipsoidal) (%) | 92.8 (43.8) |
Multiplicity | 47 (54) |
R merge (all I+ & I−) | 0.160 (4.129) |
R merge (within I+/I−) | 0.176 (4.153) |
R meas (all I+ & I−) | 0.162 (4.168) |
R meas (within I+/I−) | 0.179 (4.227) |
R pim (all I+ & I−) | 0.025 (0.561) |
R pim (within I+/I−) | 0.36 (0.784) |
CC(1/2) | 0.996 (0.598) |
Refinement | |
Number of reflections working/test | 14,553/785 |
R (working set; %) | 26.37 (37.6) |
R free (test set; %) | 27.93 (61.2) |
Structure quality | |
RNA atoms | 3174 |
Other atoms | 227 |
RMS deviations in bond lengths (Å) | 0.003 |
RMS deviations in bond angles (°) | 0.807 |
Average B factor (Å2) (RNA) | 137.4 |
Average B factor (Å2) (all atoms) | 136.8 |
aNumbers in parenthesis correspond to the highest resolution shell.
bAnisotropic data were processed used the Staraniso server (36).