Table 1.
cognate codon | near-cognate codon | UA cognate codon | UA near-cognate codon | |
PDB ID | 6OF6 | 6OJ2 | 6ORD | 6OPE |
Data collection | ||||
Wavelength (Å) | 1.0000 | 1.0000 | 0.9792 | 0.9791 |
Space group | P212121 | P212121 | P212121 | P212121 |
Cell dimensions | ||||
a, b, c (Å) | 211.3, 452.3, 626.5 | 211.0, 453.5, 625.4 | 209.4, 445.8, 616.0 | 209.4, 449.8, 620.0 |
α, β, γ (degrees) | 90, 90, 90 | 90, 90, 90 | 90, 90, 90 | 90, 90, 90 |
Resolution (Å) | 43.9 to 3.2 (3.3 to 3.2) | 50 to 3.2 (3.3 to 3.2) | 49.9 to 3.1 (3.2 to 3.1) | 49.6 to 3.1 (3.2 to 3.1) |
Rpim (%) | 7.4 (34.4) | 11.0 (74.0) | 12.7 (83.7) | 14.1 (77.0) |
I/σI | 8.26 (2.04) | 4.88 (0.98) | 4.57 (0.71) | 6.29 (1.12) |
CC1/2 | 0.993 (0.645) | 0.995 (0.329) | 0.991 (0.183) | 0.989 (0.387) |
Completeness (%) | 91.15 (91.01) | 99.52 (99.92) | 95.19 (91.69) | 97.13 (99.13) |
Redundancy | 6.6 (6.0) | 5.8 (5.6) | 3.0 (2.2) | 3.0 (3.0) |
Refinement | ||||
No. reflections | 889,696 | 971,076 | 981,305 | 1,016,419 |
Rwork/Rfree (%) | 19.5/23.2 | 23.6/27.0 | 23.2/26.8 | 22.5/26.6 |
No. atoms | ||||
Macromolecules | 297,356 | 297,318 | 290,854 | 294,030 |
Ligands | 1,319 | 1,053 | 2,965 | 951 |
B-factors | ||||
Macromolecules | 90.33 | 129.71 | 91.34 | 87.33 |
Ligands | 56.13 | 130.73 | 60.81 | 59.98 |
rms deviations | ||||
Bond lengths (Å) | 0.005 | 0.006 | 0.008 | 0.012 |
Bond angles (degrees) | 0.87 | 1.07 | 0.99 | 1.25 |
Values in parentheses are for highest-resolution shell.