Table 2.

DNS scores for TE superfamilies

TE class	TE family	A genome		B genome		D genome
		Mean†	SD‡	Mean†	SD‡	Mean†	SD‡
Class 1	RLG	− 0.0043	0.166	− 0.0131	0.268	− 0.00381	0.174
	RLC	0.0087	0.156	0.0056	0.191	0.0146	0.152
	RLX	− 0.0217	0.185	− 0.0244	0.297	− 0.0189	0.180
	RIX	0.0353	0.248	0.0262	0.230	0.0364	0.239
Class 2	DTC	0.0352	0.438	0.0248	0.981	0.0229	0.815
	DTM	0.0854	0.205	0.0744	0.202	0.0770	0.195
	DTH	0.1106	0.250	0.0867	0.252	0.0994	0.243
	DTT	0.2396	0.259	0.2318	0.261	0.2245	0.256
	DTX	0.2079	0.262	0.1939	0.271	0.2151	0.261
	DXX	0.0736	0.329	0.0531	0.252	0.1011	0.211
Unclassified	XXX	0.0171	1.862	− 0.0878	3.669	− 0.0544	3.579

^†DNS mean score for each TE family across the length of the annotated TEs (Wicker et al. [34])

^‡Standard deviation of DNS score for each TE family