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. Author manuscript; available in PMC: 2021 Jul 2.
Published in final edited form as: J Proteome Res. 2020 Jun 4;19(7):2758–2771. doi: 10.1021/acs.jproteome.0c00111

Figure 4.

Figure 4.

Second approach for deriving the best overall match of a cross-link by combining results from multiple ion fragmentation methods. The best overall match, B, is the second-best match derived from EThcD but the best match of CID, HCD and hcd. It received the highest Overall Score. Red peptides are from decoy database.