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. 2020 Jul 9;182(1):189–199.e15. doi: 10.1016/j.cell.2020.05.024

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© 2020 The Authors

This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).

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Figure S1 — Dataset Quality Control, Related to STAR Methods

Top: Size distribution of identified variants that passed all filters and were included in the final callset. Note the differences in scales between the two plots. Left: Manta+Graphtyper. Right: GenomeSTRiP – green line shows variants that have both deletion and duplication alleles. Centre: Correlation of allele frequency of variants identified by both Manta+Graphtyper and GenomeSTRiP within the HGDP dataset (Regional-specific variants, colored by region). Bottom: Allele frequency correlations between deletions identified in the 1000G and the HGDP Manta+Graphtyper callset (using African variants > 5% frequency in 1KG).