| TF | Transcription factor |
| LEDs | Light emitting diodes |
| TPM | Transcripts Per Million reads |
| DEGs | Differentially expressed genes |
| GO | Gene Ontology |
| KEGG | Kyoto Encyclopedia of Genes and Genomes |
| WGCNA | Weighted gene co-expression network analysis |
| QC | Quality control |
| ESI | Electrospray ionization |
| DP | De-clustering potential |
| CE | Collision energy |
| DDA | Data dependent acquisition |
| VIP | Variable importance of the projection |
| OPLS-DA | orthogonal partial least squares discriminate analysis |
| SCMs | Significantly changed metabolites |
| CHS | chalcone synthase |
| ADH | alcohol dehydrogenase |