Table 2:
The draft genome of Paragonimus: assembly, size, and annotation characteristics
| Statistic | Paragonimus miyazakii | Paragonimus heterotremus | Paragonimus kellicotti | Paragonimus westermani (Japan) | Paragonimus westermani (India) |
|---|---|---|---|---|---|
| Assembly statistics | |||||
| Total genome length (Mb) | 915.8 | 841.2 | 696.5 | 923.3 | 922.8 |
| Number of contigs | 22,318 | 27,557 | 29,377 | 22,477 | 30,455 |
| Mean contig size (kb) | 41 | 30.5 | 23.7 | 41.1 | 30.3 |
| Median contig size (kb) | 15.1 | 9.3 | 10.2 | 17.2 | 4.8 |
| Maximum contig size (kb) | 919.8 | 715.6 | 826 | 829 | 809.4 |
| N50 length (kb) | 108.8 | 92.5 | 56.0 | 100.8 | 135.2 |
| N50 No. | 2320 | 2506 | 3316 | 2664 | 1943 |
| BUSCO completeness (303 genes, eukarota_odb9) | |||||
| Complete, single copy (%) | 84.5 | 82.5 | 70.3 | 88.78 | 76.90 |
| Complete, duplicated (%) | 1.3 | 0.0 | 1.3 | 1.32 | 2.31 |
| Fragmented (%) | 7.6 | 10.9 | 15.2 | 6.27 | 14.85 |
| Missing (%) | 6.6 | 6.6 | 13.2 | 3.63 | 5.94 |
| Gene statistics | |||||
| No. of genes | 12,652 | 12,490 | 12,853 | 12,072 | 12,771 |
| Mean gene length (kb) | 25.9 | 22.6 | 17.6 | 24.1 | 18.0 |
| Mean CDS length (kb) | 1.5 | 1.4 | 1.1 | 1.4 | 1.4 |
| Mean intron length (kb) | 4.2 | 4 | 3.6 | 4.2 | 4.0 |
| Mean No. exons per gene | 6.7 | 6.2 | 5.3 | 6.3 | 5.2 |
| Annotated (%) | |||||
| InterPro | 82 | 85 | 81 | 87 | 82 |
| KEGG | 40 | 41 | 34 | 43 | 43 |
CDS: coding sequence.