Table 1.
Results of resequencing project: per region analyzed, retrieved single nucleotide polymorphisms (SNPs) are reported. The nucleotide triplet harboring the SNP, the amino acid substitution, the variant type, the predicted impact of the variant as well as the functional description and the relative reference sequence were reported.
| SNP Code | Description | AA Change | Variant Type | Impact | Functional Description | Ref Sequence_ID |
|---|---|---|---|---|---|---|
| A3079 | caC/caT | His/His | synonymous | LOW | uncharacterized protein LOC115978171 | Mad_contig_257281 |
| A4081 | Aca/Gca | Thr/Ala | missense | MODERATE | two-component response regulator-like APRR9 | BdB_contig_30280 |
| A5096 | gtA/gtC | Val/Val | synonymous | LOW | uncharacterized membrane protein At3g27390 | BdB_contig_81679 |
| A7075 | ccA/ccC | Pro/Pro | synonymous | LOW | DExH-box ATP-dependent RNA helicase DExH7 | BdB_contig_45109 |
| A8045 | caC/caT | His/His | synonymous | LOW | NAC domain-containing protein 35 | BdB_contig_49951 |
| A8095 | cTg/cAg | Leu/Gln | missense | MODERATE | ||
| A8121 | Ttt/Ctt | Phe/Leu | missense | MODERATE | ||
| A9081 | ctA/ctT | Leu/Leu | synonymous | LOW | Fanconi anemia group J protein homolog | BdB_contig_161049 |
| B0033 | gcA/gcG | Ala/Ala | synonymous | LOW | meiotic recombination protein DMC1 homolog | BdB_contig_344176 |
| B0042 | caT/caC | His/His | synonymous | LOW | ||
| B0081 | agG/agA | Arg/Arg | synonymous | LOW | ||
| B1077 | acA/acG | Thr/Thr | synonymous | LOW | putative E3 ubiquitin-protein ligase RF298 | BdB_contig_20383 |
| B2081, B2082 | AGa/RRa | Arg/Glu | missense | MODERATE | probable protein phosphatase 2C 42 | Mad_contig_4982354 |
| B3127 | ctT/ctC | Leu/Leu | synonymous | LOW | nuclear pore complex protein NUP58 | XM_024070927 |
| B5060 | gaA/gaG | Glu/Glu | missense | MODERATE | trihelix transcription factor GT-2-like | BdB_contig_32135 |
| C0114 | agT/agC | Ser/Ser | synonymous | LOW | uncharacterized protein LOC115981485 | Mad_contig_4969272 |
| C1083 | aAg/aGa | Lys/Arg | missense | MODERATE | intermediate cleaving peptidase 55, mitochondrial | BdB_contig_2198 |
| C1115 | atT/atA | Ile/Ile | synonymous | LOW | ||
| C2122 | aCt/aAt | - | intergenic | MODIFIER | protein PHR1-LIKE 1-like | XM_024065219 |
| C3057 | ggC/ggT | Gly/Gly | synonymous | LOW | pentatricopeptide repeat-containing protein | BdB_contig_73204 |
| C4088 | Acc/Gcc | Thr/Ala | missense | MODERATE | uncharacterized protein LOC115978856 | BdB_contig_23188 |
| C4092 | tTc/tCt | Phe/Ser | missense | MODERATE | ||
| C5126 | ccA/ccC | Pro/Pro | synonymous | LOW | peptidyl-prolyl cis-trans isomerase E | XM_024025215 |
| C7034, C7035 | cRY/cRY | His/Arg | missense | MODERATE | 26S proteasome non-ATPase regulatory subunit 10 | XM_024044673 |
| C7040 | aAa/aTa | Lys/Ile | missense | MODERATE | ||
| C9098 | aCt/aAt | Thr/Asn | missense | MODERATE | dentin sialophospho | BdB_contig_9459 |
| D3098 | ggG/ggT | Gly/Gly | synonymous | LOW | Ribosomal protein | BdB_contig_47152 |
| D3104 | tcG/tcA | Ser/Ser | synonymous | LOW | ||
| E0104 | Ggt/Agt | Gly/Ser | missense | MODERATE | midasin | XM_031113223 |
| E1081 | Agg/Ggg | Arg/Gly | missense | MODERATE | probable E3 ubiquitin-protein ligase RHC1A | Mad_contig_9295 |
| E1091 | gCt/gGt | Ala/Gly | missense | MODERATE | zinc finger protein ZAT3-like | Mad_contig_9295 |
| E2081 | ttT/ttC | Phe/Phe | synonymous | LOW | peroxidase 19 | BdB_contig_168068 |
| E2115 | cAt/cGt | His/Arg | missense | MODERATE | ||
| F0090 | gAa/gGa | Glu/Leu | missense | MODERATE | formin-like protein 5 | BdB_contig_78166 |
| F0115 | Tat/Cat | Tyr/His | missense | MODERATE | ||
| F0116 | ctG/ctT | Leu/Leu | synonymous | LOW | ||
| F1081 | tcT/tcA | Ser/Ser | synonymous | LOW | protein-tyrosine-phosphatase IBR5 | BdB_contig_59988 |
| F3045 | gaC/gaT | Asp/Asp | synonymous | LOW | uncharacterized aarF domain-containing protein kinase | BdB_contig_105211 |
| F3081 | Tct/Cct | Ser/Pro | missense | MODERATE | ||
| G0115 | Act/Gct | Ala/Thr | missense | MODERATE | probable E3 ubiquitin-protein ligase RHC1A | XM_024060281 |
| G1038 | atT/atC | Ile/Ile | synonymous | LOW | protease Do-like 7 | BdB_contig_20564 |
| G3081 | ggC/ggT | Gly/Gly | synonymous | LOW | phospholipase A-2-activating protein | BdB_contig_6253 |
| G3111 | tgT/tgC | Cys/Cys | synonymous | LOW | ||
| G4023 | gCg/gTg | Ala/Val | missense | MODERATE | uncharacterized protein LOC112036137 | Mad_contig_4962484 |
| G4120 | tcT/tcC | Ser/Ser | synonymous | LOW | ||
| G5075 | ggG/ggA | Gly/Gly | synonymous | LOW | zinc finger protein ZAT3-like | XM_031086265 |
| G5083 | Tcc/Gcc | Ser/Ala | missense | MODERATE | ||
| G5135 | ccA/ccG | Pro/Pro | synonymous | LOW | ||
| H0106 | tTt/tAt | Phe/Tyr | missense | MODERATE | AP2/ERF and B3 domain-containing RAV1-like | BdB_contig_11865 |
| H2081 | gcC/gcT | Ala/Ala | synonymous | LOW | importin-5-like | BdB_contig_11365 |
| H2132 | tcG/tcA | Ser/Ser | synonymous | LOW | ||
| H4081 | gcC/gcT | Ala/Ala | synonymous | LOW | ATP synthase subunit beta, mitochondrial | BdB_contig_1478 |
| I0081 | acG/acA | Thr/Thr | synonymous | LOW | mediator of RNA polymerase II transcription subunit 4 | BdB_contig_35713 |
| I2081 | gGt/gCt | Gly/Ala | missense | MODERATE | WUSCHEL-related homeobox 11-like | XM_031069633 |
| J0109 | cAt/cGt | His/Arg | missense | MODERATE | probable receptor-like serine/threonine-protein kinase | BdB_contig_35898 |
| J1105 | tcG/tcC | Ser/Ser | synonymous | LOW | zinc finger CCCH domain-containing protein 12 | BdB_contig_42954 |
| J1108 | tcT/tcG | Ser/Ser | synonymous | LOW | ||
| J2081 | aAc/aGc | Asn/Ser | missense | MODERATE | E3 ubiquitin-protein ligase | BdB_contig_13323 |
| K0044 | ggC/ggT | Gly/Gly | synonymous | LOW | nuclear-pore anchor | BdB_contig_7400 |
| K0049 | aCa/aTa | Thr/Ile | missense | MODERATE | ||
| K0081 | Atg/Gtg/Ttg | Met/Val/Leu | missense | MODERATE | ||
| K1126 | atA/atG | Ile/Met | missense | MODERATE | serrate RNA effector molecule-like | BdB_contig_6695 |
| K4081 | gaC/gaT | Asp/Asp | synonymous | LOW | O-fucosyltransferase 20 | BdB_contig_67709 |
| L0115 | gCg/gGg | Ala/Gly | missense | MODERATE | protein DOWNY MILDEW RESISTANCE 6 | BdB_contig_72305 |
| L1081 | ccG/ccA | Pro/Pro | synonymous | LOW | serine/threonine-protein kinase-like protein | Mad_contig_4983178 |
| L1117 | cgA/cgT | Arg/Arg | synonymous | LOW | ||
| L2056 | cAt/cGt | His/Arg | missense | MODERATE | uncharacterized protein LOC112025178 | BdB_contig_51854 |
| L4081 | ctC/ctT | Leu/Leu | synonymous | LOW | GTP cyclohydrolase 1 | BdB_contig_65823 |