Table 2.
Results of kompetitive allele-specific PCR (KASP) analyses on 20 genotypes of 37 selected SNPs. IUPAC code is used for heterozygous alleles. Question mark for missing data.
| Clone | A3079 | A5096 | A7075 | A8095 | A9081 | B0042 | B1077 | B2082 | B3127 | B5060 | C0114 | C1083 | C2122 | C3057 | C4088 | C4092 | C9098 | D3098 | D3104 | E0104 | E1091 | E2115 | F1081 | F3045 | G0115 | G4120 | G5083 | H0106 | J0109 | J1108 | J1105 | K0081 | K0049 | K1126 | L0115 | L1117 | L4081 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BdB1 | Y | M | T | W | T | Y | R | R | A | G | T | C | C | C | G | Y | A | G | C | C | S | Y | W | R | R | C | M | W | R | G | G | G | T | C | S | A | A |
| BdB2 | Y | M | T | W | T | Y | R | R | A | G | T | C | C | C | G | Y | A | G | C | C | S | Y | W | R | R | C | M | W | R | G | G | G | T | C | S | A | A |
| BdB3 | Y | M | T | W | T | Y | R | R | A | G | T | C | C | C | G | Y | A | G | C | C | S | Y | W | R | R | C | M | W | R | G | G | G | T | C | S | A | A |
| LCN1 | T | A | T | T | A | C | G | A | A | A | T | Y | C | Y | G | C | A | G | C | Y | C | ? | A | R | R | Y | M | W | A | G | C | G | C | C | G | A | A |
| MRZ1 | T | M | T | T | A | C | ? | R | A | A | Y | Y | C | C | G | C | A | T | Y | C | C | T | A | G | A | T | M | W | A | G | C | R | Y | C | G | W | A |
| MRZ2 | T | M | T | T | A | C | G | R | A | A | Y | Y | C | C | G | C | A | T | Y | C | C | T | A | G | A | T | M | W | A | G | C | R | Y | C | G | W | A |
| MRC1 | Y | M | K | T | T | T | G | G | A | A | Y | C | C | Y | G | C | M | G | C | C | S | Y | W | G | G | Y | M | W | A | K | G | G | Y | Y | G | T | G |
| MRC2 | Y | M | K | T | T | T | G | G | A | A | Y | C | C | Y | G | C | M | G | C | C | S | Y | W | G | G | Y | M | W | A | K | G | G | Y | Y | G | T | G |
| NPL1 | T | A | T | T | W | Y | G | R | A | A | T | T | M | C | G | Y | A | G | C | Y | C | T | A | R | R | Y | A | A | A | G | G | R | Y | Y | G | A | A |
| NPL2 | T | A | T | T | W | Y | G | R | A | A | T | ? | M | C | G | Y | A | G | C | Y | C | T | A | R | R | Y | A | A | A | G | G | R | Y | Y | G | A | A |
| NPL3 | T | A | T | T | W | Y | G | R | A | A | T | T | M | C | G | Y | A | G | C | Y | C | T | A | R | R | Y | A | A | A | G | G | R | Y | Y | G | A | A |
| OLF1 | C | C | T | T | A | Y | G | G | A | A | T | Y | C | Y | R | Y | A | G | C | C | C | Y | A | G | A | T | M | A | R | G | G | G | Y | C | G | A | A |
| PCT1 | T | M | T | T | A | Y | G | R | A | A | T | T | M | C | G | Y | A | G | C | Y | C | T | A | R | R | Y | ? | W | A | K | C | R | Y | ? | G | W | A |
| PCT2 | T | M | T | T | A | Y | G | R | A | A | T | T | M | C | G | Y | A | G | C | Y | C | T | A | R | R | Y | A | W | A | K | C | R | Y | Y | G | W | A |
| PCT3 | T | M | T | T | A | Y | G | R | A | A | T | T | M | C | G | Y | A | G | C | Y | C | T | A | R | R | Y | A | W | A | K | C | R | Y | Y | G | W | A |
| SPT1 | T | A | T | T | A | Y | ? | G | R | A | Y | C | C | C | G | Y | A | G | Y | C | C | C | W | G | R | Y | A | A | A | K | G | G | C | T | G | W | R |
| SPT2 | T | A | T | T | A | Y | G | G | R | A | Y | C | C | C | G | ? | A | G | Y | C | C | C | W | G | R | Y | A | A | A | K | G | G | C | T | G | W | R |
| TMP1 | T | A | K | T | W | Y | G | R | A | A | T | Y | M | Y | G | Y | A | G | C | Y | C | Y | W | R | G | Y | A | A | R | K | G | G | C | Y | S | A | A |
| TMP2 | T | A | K | T | W | Y | ? | R | A | A | T | Y | M | Y | G | Y | A | G | C | Y | C | Y | W | R | G | Y | A | A | R | K | G | G | C | Y | S | A | A |
| TMP3 | T | A | K | T | W | Y | ? | R | A | A | T | Y | M | Y | G | Y | A | G | C | Y | C | Y | W | R | G | Y | A | ? | R | K | G | G | C | Y | S | A | A |