Table 2.
Comparison of key feasible beast runs and BactDating models of phylogenetic dating
|
Lineage sub-clade |
Year range |
N |
beast tMRCA |
BactDating tMRCA |
|---|---|---|---|---|
|
GPSC3 |
18 |
358 |
Run infeasible |
1720.54 [1634.01–1780.92] |
|
GPSC3-CC53 |
12 |
152 |
1879 [1820.49–1921.87] |
1926.77 [1907.99–1941.56] |
|
GPSC3-CC62 |
17 |
56 |
1912.82 [1667.10–1967.00] |
1929.64 [1908.24–1944.03] |
|
GPSC3-CC100 |
17 |
67 |
1937.13 [1920.19–1950.82] |
1919.82 [1899.11–1936.45] |
|
GPSC3-CC1012 |
17 |
83 |
1878 [1808.91–1925.02] |
1840.70 [1802.97–1870.36] |
CC, Clonal Complex; GPSC, Global Pneumococcal Sequence Cluster; tMRCA, Time to Most Recent Common Ancestor.