Table 3.

Pathogenwatch output

	Summary
No. assemblies processed	17
No. analyses performed	102
Time taken	3 min
No. contigs	38–58
GC content	39.5–39.6 %
Assembly length	2.04–2.14 Mb
Species	Streptococcus pneumoniae (100 %, 17/17)
Serotype	1 (100 %, 17/17)
ST	ST227 (59 %, 10/17) ST306 (24 %, 4/17) ST304 (12 %, 2/17) ST4288 (6 %, 1/17)
Strain	GPSC31 (100 %, 17/17)
AMR determinants	None identified

AMR, Antimicrobial resistance; Mb, Megabases.