Table 2.

Minor allele frequencies. SNPs and indels are shown in 5’ to 3’ order from top to bottom

Marker	WHWT		Springer Spaniel		Cocker Spaniel
	Minor Allele	MAF	Minor Allele	MAF	Minor Allele	MAF
SNP1	A	0.102	A	0.38	A	0.086
SNP2	A	0.102	A	0.38	A	0.086
SNP3	A	0	A	0.0059	A	0.0071
SNP4	A	0.102	A	0.38	A	0.086
SNP5	A	0.102	A	0.38	A	0.086
SNP6	A	0.102	A	0.38	A	0.086
SNP7	G	0.102	G	0.39	G	0.086
SNP8	A	0	A	0.012	A	0
SNP9	A	0.102	A	0.36	A	0.014
SNP10	G	0.102	G	0.38	G	0.086
SNP11	G	0	G	0	G	0
SNP12	T	0.102	T	0.38	T	0.086
SNP13	T	0.034	T	0.14	T	0.036
SNP14	A	0.49	C	0.4	C	0.093
SNP15	C	0.102	C	0.38	C	0.086
SNP16	G	0.102	G	0.38	G	0.086
SNP17	C	0	C	0	C	0
SNP18	G	0.407	G	0.0059	G	0
SNP19	A	0.102	A	0.38	A	0.086
SNP20	T	0	T	0	T	0
indel1	–	0	–	0	–	0
indel2	–	0.102	–	0.38	–	0.086
indel3	+	0.14	–	0.49	+	0.12