Table 1.
Details of accessions and their Indica-Japonica classification as presumed by four INDEL markers
| Accession | Cultivation type | Type | Origin | Location/ Country |
DNA Cluster |
INDELa | Indica-Japonicab
classification |
|||
|---|---|---|---|---|---|---|---|---|---|---|
| ORF100 | Pgi 1 | Cat 1 | Acp2 | |||||||
| SGU01 | Upland | Landrace | South NNPR | Ethiopia | Ia | ND | D | D | INS | Rec. |
| GAM02 | Upland | Landrace | Gambella | Ethiopia | Ia | ND | D | ND | Non-INS | Rec. |
| AMF13 | Lowland | Landrace | Amhara | Ethiopia | Ia | ND | D | D | INS | Rec. |
| GAM04 | Upland | Landrace | Gambella | Ethiopia | Ia | ND | D | D | Non-INS | Rec. |
| BGP-01 | Upland | Landrace | Benshangulgumize | Ethiopia | Ia | ND | D | ND | Non-INS | Rec. |
| BGP-03 | Upland | Landrace | Benshangulgumize | Ethiopia | Ia | ND | D | D | INS | Rec. |
| BGP-04 | Upland | Landrace | Benshangulgumize | Ethiopia | Ia | ND | D | D | INS | Rec. |
| BGP-05 | Upland | Landrace | Benshangulgumize | Ethiopia | Ia | ND | D | D | INS | Rec. |
| BGP-06 | Upland | Landrace | Benshangulgumize | Ethiopia | Ia | ND | D | D | INS | Rec. |
| BGP-07 | Upland | Landrace | Benshangulgumize | Ethiopia | Ia | ND | D | D | INS | Rec. |
| BGP-09 | Upland | Landrace | Benshangulgumize | Ethiopia | Ia | ND | D | D | INS | Rec. |
| BGP-10 | Upland | Landrace | Benshangulgumize | Ethiopia | Ia | ND | D | D | INS | Rec. |
| BGP-11 | Upland | Landrace | Benshangulgumize | Ethiopia | Ia | ND | D | D | INS | Rec. |
| BGP-12 | Upland | Landrace | Benshangulgumize | Ethiopia | Ia | ND | D | D | INS | Rec. |
| BGP-13 | Upland | Landrace | Benshangulgumize | Ethiopia | Ia | ND | D | D | INS | Rec. |
| BGP-14 | Upland | Landrace | Benshangulgumize | Ethiopia | Ia | ND | D | D | INS | Rec. |
| BGP-15 | Upland | Landrace | Benshangulgumize | Ethiopia | Ia | ND | D | D | INS | Rec. |
| AMF14 | Lowland | Landrace | Amhara | Ethiopia | Ia | ND | D | D | INS | Rec. |
| Fogera 1 | Upland | Improved | Africa Rice Center | Côte d’Ivoire | Ia | ND | D | D | INS | Rec. |
| Adet | Upland | Improved | Africa Rice Center | Côte d’Ivoire | Ia | ND | D | ND | Non-INS | Rec. |
| NERICA-12 | Upland | Improved | Africa Rice Center | Côte d’Ivoire | Ia | ND | D | ND | Non-INS | Rec. |
| NERICA-13 | Upland | Improved | Africa Rice Center | Côte d’Ivoire | Ia | ND | ND | ND | Non-INS | Rec. |
| Chewaqa | Upland | Improved | China | China | Ia | ND | D | D | INS | Rec. |
| Hiddasse | Upland | Improved | Africa Rice Center | Côte d’Ivoire | Ia | ND | D | ND | Non-INS | Rec. |
| NERICA-3 | Upland | Improved | Africa Rice Center | Côte d’Ivoire | Ia | ND | D | D | INS | Rec. |
| NERICA-4 | Upland | Improved | Africa Rice Center | Côte d’Ivoire | Ia | ND | D | D | INS | Rec. |
| SUPERICA-1 | Upland | Improved | Africa Rice Center | Côte d’Ivoire | Ia | ND | D | D | Non-INS | Rec. |
| Kokit | Upland | Improved | Amhara | Ethiopia | Ia | ND | D | D | Non-INS | Rec. |
| Pawe-1 | Upland | Improved | Benshangulgumize | Ethiopia | Ia | ND | D | D | INS | Rec. |
| Hiber | Lowland | Improved | Africa Rice Center | Côte d’Ivoire | Ia | ND | D | D | Non-INS | Rec. |
| Ediget | Lowland | Improved | Africa Rice Center | Côte d’Ivoire | Ia | ND | D | D | INS | Rec. |
| NERICA-15 | Intermittent irrigated | Improved | Africa Rice Center | Côte d’Ivoire | Ia | ND | D | ND | Non-INS | Rec. |
| NERICA-6 | Intermittent irrigated | Improved | Africa Rice Center | Côte d’Ivoire | Ia | ND | D | ND | Non-INS | Rec. |
| NERICA-14 | Intermittent irrigated | Improved | Africa Rice Center | Côte d’Ivoire | Ia | ND | D | ND | Non-INS | Rec. |
| Kallafo-1 | Intermittent irrigated | Improved | Madagascar | Madagascar | Ia | ND | D | D | INS | Rec. |
| NERICA-1 | Intermittent irrigated | Improved | Africa Rice Center | Côte d’Ivoire | Ia | ND | D | ND | Non-INS | Rec. |
| NERICA-2 | Intermittent irrigated | Improved | Africa Rice Center | Côte d’Ivoire | Ia | ND | D | ND | Non-INS | Rec. |
| NERICA-10 | Intermittent irrigated | Improved | Africa Rice Center | Côte d’Ivoire | Ia | ND | D | ND | Non-INS | Rec. |
| Abay | Upland | Improved | Africa Rice Center | Côte d’Ivoire | Ia | ND | D | D | INS | Rec. |
| Candidate 3 | Lowland | Improved | International Rice Research Institute | Philippines | Ia | ND | D | ND | Non-INS | Rec. |
| Erib | Lowland | Improved | Africa Rice Center | Côte d’Ivoire | Ia | ND | D | ND | Non-INS | Rec. |
| Candidate 4 | Lowland | Improved | Madagascar | Madagascar | Ia | ND | D | D | INS | Rec. |
| Wanzaye | Lowland | Improved | Madagascar | Madagascar | Ia | ND | D | ND | Non-INS | Rec. |
| Shaga | Lowland | Improved | Madagascar | Madagascar | Ia | ND | D | D | INS | Rec. |
| Demoze | Lowland | Landrace | Amhara | Ethiopia | Ib | ND | D | ND | INS | J |
| X-JIGNA | Lowland | Landrace | Amhara | Ethiopia | Ib | ND | D | ND | INS | J |
| GAM01 | Upland | Landrace | Gambella | Ethiopia | Ib | ND | D | ND | INS | J |
| SGU09 | Upland | Landrace | South NNPR | Ethiopia | II | D | ND | D | Non-INS | I |
| AMF06 | Lowland | Landrace | Amhara | Ethiopia | II | ND | ND | ND | INS | Rec. |
| AMF12 | Lowland | Landrace | Amhara | Ethiopia | II | ND | ND | ND | Non-INS | Rec. |
| GAM03 | Upland | Landrace | Gambella | Ethiopia | II | ND | ND | D | Non-INS | Rec. |
| BGA01 | Upland | Landrace | Benshangulgumize | Ethiopia | II | ND | ND | D | Non-INS | Rec. |
| BGP-02 | Upland | Landrace | Benshangulgumize | Ethiopia | II | ND | ND | D | INS | Rec. |
| Getachew | Upland | Improved | Amhara | Ethiopia | II | ND | ND | D | Non-INS | Rec. |
| Andassa | Upland | Improved | Amhara | Ethiopia | II | ND | ND | D | Non-INS | Rec. |
| Tana | Upland | Improved | Amhara | Ethiopia | II | ND | ND | D | Non-INS | Rec. |
| Fogera2 (Komboka) | Lowland | Improved | International Rice Research Institute | Philippines | II | D | ND | D | Non-INS | I |
| Gumara | Lowland | Improved | Amhara | Ethiopia | II | ND | ND | D | Non-INS | Rec. |
| Candidate 1 | Lowland | Improved | International Rice Research Institute | Philippines | II | ND | ND | D | Non-INS | Rec. |
| Candidate 2 | Lowland | Improved | International Rice Research Institute | Philippines | II | ND | ND | D | Non-INS | Rec. |
a Genotypes of ORF100, -Pgi 1-INDEL-Cat 1-INDEL-Acp2-INDEL: ND-D-ND-INS for Japonica, D-ND-D-Non-INS for Indica type.
b Classification into Indica (I) or Japonica (J) was based on Muto et al. (2016); Rec. refers to recombinant.