TABLE 3.

Significantly enriched hallmarks in the TCGA discovery cohort by GSEA.

Name	Size	ES	NES	NOM p-value	FDR q-value
HALLMARK_BILE_ACID_METABOLISM	64	0.7341	1.6979	0.00E+00	2.43E-01
HALLMARK_XENOBIOTIC_METABOLISM	122	0.6983	1.6664	1.16E-02	2.16E-01
HALLMARK_COAGULATION	67	0.6688	1.6558	5.93E-03	1.74E-01
HALLMARK_ADIPOGENESIS	92	0.5219	1.6412	3.44E-02	1.55E-01
HALLMARK_PEROXISOME	59	0.5467	1.6125	3.77E-02	1.39E-01
HALLMARK_G2M_CHECKPOINT	86	−0.7808	−1.7797	1.98E-03	9.04E-02
HALLMARK_MITOTIC_SPINDLE	83	−0.6006	−1.7329	1.17E-02	7.50E-02
HALLMARK_E2F_TARGETS	98	−0.7616	−1.7034	7.98E-03	6.82E-02
HALLMARK_DNA_REPAIR	69	−0.4284	−1.5759	4.82E-02	1.25E-01