REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Rabbit Anti-CdvB | [17] | N/A |
Chicken Anti-CdvB1 | [17] | N/A |
Guinea pig Anti-CdvB2 | [17] | N/A |
Mouse Anti-Alba | [17] | N/A |
Goat anti-rabbit IRDye 680CW | LI-COR | Cat# 926-68021; RRID:AB_10706309 |
Donkey anti-chicken IRDye 800CW | LI-COR | Cat# 926-32218; RRID:AB_1850023 |
Donkey anti-guinea pig 800CW | LI-COR | Cat# 926-32411; RRID:AB_1850024 |
Goat anti- mouse IRDye 800CW | LI-COR | Cat# 926-32210; RRID:AB_621842 |
Goat anti-rabbit Alexa Fluor 546 | Invitrogen | Cat# A11035; RRID:AB_143051 |
Goat anti-guinea pig Alexa Fluor 488 | Invitrogen | Cat# A11073; RRID:AB_2534117 |
Goat anti-chicken Alexa Fluor 488 | Invitrogen | Cat# A11039; RRID:AB_142924 |
Chemicals, Peptides, and Recombinant Proteins | ||
SYBR safe | Thermo Fisher Scientific | Cat# S33102 |
Nile red | Sigma-Aldrich | Cat #72485 |
Concanavalin A Alexa Fluor 647 Conjugated | Thermo Fisher Scientific | Cat# C21421 |
DNase I | Thermo Fisher Scientific | Cat# EN0521 |
EDTA-free protease inhibitor cocktail | Roche | Cat# 11836170001 |
Hoechst | Invitrogen | Cat# H3570 |
Experimental Models: Organisms/Strains | ||
S. solfataricus P2 (Wild type) | DSMZ | DSM1616 |
S. acidocaldarius DSM639 (Wild type) | DSMZ | DSM639 |
MW001 Uracil auxotrophic background strain ΔpyrE (Δbp 91–412), background: S. acidocaldarius DSM639 | [6] | N/A |
ΔcdvB1 (Saci_0451) (background MW001) | This work | N/A |
ΔcdvB2 (Saci_1416) (background MW001) | This work | N/A |
ΔcdvB2+pSVA (ΔcdvB2 transformed with pSVA empty plasmid) | This work | N/A |
ΔcdvB2+pSVA-CdvB2 (ΔcdvB2 transformed with pSVA containing the wild-type gene of CdvB2, under an inducible promoter controlled by Arabinose) | This work | N/A |
Recombinant DNA | ||
Plasmid pSVA431 (Backbone of deletion plasmid containing a pyrEF and LacS cassette from S. solfataricus) | [6] | N/A |
Plasmid pSVA1895 Used for deletion of cdvB1 (Saci_0451) |
This work | N/A |
Plasmid pSVA1896 Used for deletion of cdvB2 (Saci_1416) |
This work | N/A |
Plasmid pSVAaraFX-stop Backbone of expression plasmid harboring an arabinose inducible promoter containing a pyrEF cassette from S. solfataricus |
[41] | N/A |
Plasmid pSVAaraCdvB2 Used for expression of CdvB2 (Saci_1416) | This work | N/A |
Software and Algorithms | ||
Adobe Ilustrator | Adobe Inc. | https://www.adobe.com/products/illustrator |
Prism v.8 | GraphPad | https://www.graphpad.com/scientific-software/prism/ |
ImageJ (FiJi) | NIH | https://imagej.nih.gov/ij/ |
ImageJ plugin StackReg | [42] | http://bigwww.epfl.ch/thevenaz/stackreg |
FlowJo v10.1 | FlowJo | https://www.flowjo.com/solutions/flowjo |