Antibodies |
|
Chicken anti-GFP |
Abcam |
CAT#ab13970; RRID: AB_300798
|
Rabbit anti-tRFP |
Evrogen |
CAT#AB233; RRID: AB_2571743
|
Rabbit anti-Cx43 |
Sigma-Aldrich |
CAT#C6219-1MG; RRID: AB_476857
|
Anti-chicken Alexa488 |
Invitrogen |
CAT# A-11039; RRID: AB_142924
|
Rabbit anti-β-Tubulin |
Abcam |
CAT#ab209866 |
Rabbit IgG control |
Merck |
CAT#12-370; RRID: AB_145841
|
Goat anti-rabbit HRP antibody |
Abcam |
CAT#ab97080; RRID: AB_10679808
|
Anti-rabbit-Cy3 |
Jackson ImmunoResearch |
CAT#711-165-152; RRID: AB_2307443
|
|
Bacterial and Virus Strains |
|
PAO1 Pseudomonas aeruginosa
|
Martin Welch |
N/A |
|
Chemicals, Peptides, and Recombinant Proteins |
|
Cxcl8a |
ProteinTech |
N/A |
non-hydrolysable ATP-γS |
Sigma-Aldrich |
CAT#A1388-1MG |
SKF 96365 |
Cayman Chemical |
CAT#10009312 |
P. aeruginosa isolation agar |
Scientific laboratory supplies LTD |
CAT#257002 |
Nalidixic acid |
Scientific laboratory supplies LTD |
CAT#SR102E |
DMEM |
Invitrogen |
CAT# 16219961 |
FBS |
GIBCO ThermoFisher Scientific |
CAT# 16140071 |
Penicillin/Streptomycin |
Sigma-Aldrich |
CAT#TMS-AB2-C |
DAPI |
Sigma-Aldrich |
CAT#D8417-1MG |
Lipofectamine 2000 |
invitrogen |
CAT# 11668019 |
LTB4 |
Sigma-Aldrich |
CAT#L0517-10UG |
NF279 |
BIO-TECHNE LTD |
CAT#1199 |
U-75302 |
Cayman Chemical |
CAT#70705 |
MS-222 |
Sigma-Aldrich |
CAT# E10521-50G |
2-APB |
Tocris Bioscience |
CAT#1224 |
Methylene blue |
Sigma-Aldrich |
CAT# M9140-25G |
1-phenyl-2-thiourea |
Sigma-Aldrich |
CAT#P7629-25G |
EGTA |
Sigma-Aldrich |
CAT#E3889-25G |
Carbenoxolone |
Sigma-Aldrich |
CAT#C4790-5G |
Methanol-free formaldehyde |
Thermofisher |
CAT#28906 |
Sudan Black |
Sigma-Aldrich |
CAT#3080-1KT |
PBS |
Oxoid |
CAT#BR0014G |
Tween-20 |
Sigma-Aldrich |
CAT#P-1379 |
Syto-62 |
Invitrogen |
CAT#S11344 |
Low melting point agarose |
Invitrogen |
CAT#16520-100 |
A23187 |
Sigma-Aldrich |
CAT# C7522-10MG |
|
Critical Commercial Assays |
|
KOD Hot start kit |
Novagen, TOYOBO |
CAT#71086 |
SuperScript III Reverse Transcriptase |
Invitrogen |
CAT#18080051 |
RNAeasy minikit |
QIAgen |
CAT#74104 |
Pierce ECL Plus Western Blotting Substrate |
Invitrogen |
CAT#32132 |
Sp6 mMessage mMachine kit |
Ambion |
CAT#AM1340 |
|
Experimental Models: Cell Lines |
|
HEK293T cells |
Felix Randow’s laboratory |
N/A |
|
Experimental Models: Organisms/Strains |
|
Zebrafish Tg(lyz:GCamp6F) |
This paper |
N/A |
Zebrafish Tg(lyz:cx43 dn-T2A-mCherry) |
This paper |
N/A |
Zebrafish Tg(lyz:tRFP-5LO) |
This paper |
N/A |
Zebrafish Tg(mpx:GFP)i114
|
[60] |
N/A |
Zebrafish Tg(lyz:lta4h-eGFP) |
This paper |
N/A |
Zebrafish AB strain |
PDN fish facility |
N/A |
|
Oligonucleotides |
|
Primer cx43 Forward: 5¢-GCTCTCCA CTCTTTACTTCTTTCCAG-3¢ |
This paper |
N/A |
Primer cx43 Reverse: 5¢-GTATTGCACTTGAAAGCTGACTGC-3¢ |
This paper |
N/A |
Primer cx43.4 Forward: 5¢-GAGTCGTCATCGCGAGACATTGA-3¢ |
This paper |
N/A |
Primer cx43.4 Reverse: 5¢-GTCTATGAGTCTCAATCAAGCATGGATCC-3¢ |
This paper |
N/A |
Primer lta4h Forward: 5¢-TCTGAGAAGGAATATGTGGATGAA-3¢ |
[18] |
N/A |
Primer lta4h Reverse: 5¢-CAGCAAGAGATCTGTCTCCA-3¢ |
[18] |
N/A |
cx43 translation morpholino: 5¢-GTTCTAGCTGGAAAGAAGTAAAGAG-3¢ |
Gene Tools |
ZFIN: ZDB-MRPHLNO-080818-1 |
cx43.4 Splice Morpholino: 5¢-ACTTCTCCATCTCCGTTATATTTTG-3¢ |
Gene Tools |
N/A |
Control Morpholino 5¢-CCTCTTACCTCAGTTACAATTTATA-3¢ |
Gene Tools |
https://www.gene-tools.com/content/negative-control-morpholino-oligos |
lta4h splice morpholino: 5¢-CAGTCTGATCAAGAGAAAGACTCGA-3¢ |
Gene Tools |
ZFIN: DB-MRPHLNO-171122-3 |
|
Recombinant DNA |
|
GCamp6F |
[22] |
N/A |
lta4h-EGFP |
Gene synthesized (Genewiz) |
lta4h cDNA: ENSDART00000028171.7 |
tRFP-5lo
|
cDNA library from whole adult zebrafish |
5lo/alox5a cDNA: ENSDART00000079884.6 |
cx43dn_T2a_mCherry |
(Gene synthesized (Genewiz) |
N/A |
Cxcl8-mCherry |
[30] |
N/A |
pCS2-TP |
[61] |
N/A |
|
Software and Algorithms |
|
MATLAB R2018b |
https://www.mathworks.com/ |
N/A |
Imaris v8.2 |
https://imaris.oxinst.com/ |
N/A |
Fiji |
https://fiji.sc/ |
N/A |
|
Other |
|
Bolt 10% Bis-Tris Plus Gel |
Invitrogen |
CAT#NW00100BOX |
1mm glass beads |
BioSpec |
CAT#11079110 |
iBlot2 transfer stack |
Life Technologies |
CAT#IB23001 |